Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Videos

The integrated microbial genomes (IMG) system.

Victor M Markowitz1, Frank Korzeniewski, Krishna Palaniappan

  • 1Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, USA.

Nucleic Acids Research
|December 31, 2005
PubMed
Summary
This summary is machine-generated.

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

A bioinspired fish fin webbing for proprioceptive feedback.

Bioinspiration & biomimetics·2024
Same author

Clinical characteristics and treatment outcomes of angiosarcoma of the head and neck: A 17-year single-centre experience.

Journal of plastic, reconstructive & aesthetic surgery : JPRAS·2023
Same author

Characterizations and Inkjet Printing of Carbon Black Electrodes for Dielectric Elastomer Actuators.

ACS applied materials & interfaces·2023
Same author

Fluid Optimisation in Emergency Laparotomy (FLO-ELA) Trial: study protocol for a multi-centre randomised trial of cardiac output-guided fluid therapy compared to usual care in patients undergoing major emergency gastrointestinal surgery.

Trials·2023
Same author

A Skin-Like Soft Compression Sensor for Robotic Applications.

Soft robotics·2023
Same author

The development of a minimum dataset for MRI reporting of anorectal fistula: a multi-disciplinary, expert consensus process.

European radiology·2022
Same journal

VeloRM: disentangling pre- and post-splicing RNA modification dynamics at single-cell resolution.

Nucleic acids research·2026
Same journal

Accessibility of telomeric overhangs to stabilizing small-molecule ligands.

Nucleic acids research·2026
Same journal

Multivalent interactions mediate SNAIL transcription factor stimulation of the nucleosome deacetylase activity of the CoREST complex.

Nucleic acids research·2026
Same journal

Genome-wide mapping of DNA G-quadruplexes in Trypanosoma brucei chromatin reveals enrichment in coding regions and transcription start sites.

Nucleic acids research·2026
Same journal

Epigenetic landscape of synthetic human centromere core regions: CENP-A assembly and euchromatic modifications interdependently antagonize heterochromatin accumulation.

Nucleic acids research·2026
Same journal

MAPK/ERK signaling regulates H3K9me3 heterochromatin reorganization to confer mesendoderm developmental competence.

Nucleic acids research·2026
See all related articles

The Integrated Microbial Genomes (IMG) system offers a new platform for managing and analyzing microbial genomic data. It integrates JGI and public genomes, providing tools for comparative analysis across all domains of life.

Area of Science:

  • Microbiology
  • Bioinformatics
  • Genomics

Background:

  • Microbial genomics research generates vast amounts of data.
  • Efficient data management and analysis are crucial for advancing microbial research.
  • Existing platforms may lack comprehensive integration or user-friendly analysis tools.

Purpose of the Study:

  • Introduce the Integrated Microbial Genomes (IMG) system.
  • Provide a centralized platform for microbial genome data management and analysis.
  • Facilitate comparative genomics and functional analysis.

Main Methods:

  • Integration of draft and complete microbial genomes from JGI.
  • Inclusion of publicly available microbial genomes from all three domains of life.
  • Development of analysis tools and viewers for genomes, genes, and functions.

Related Experiment Videos

Main Results:

  • IMG provides a unified resource for diverse microbial genomic data.
  • Users can perform individual and comparative analyses of genomes and genes.
  • The system allows for focused analysis on selected subsets of data and saving results.

Conclusions:

  • The IMG system enhances microbial genome data accessibility and analysis capabilities.
  • It supports research across microbiology, genomics, and bioinformatics.
  • The platform facilitates deeper insights into microbial life through integrated data and tools.