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Related Experiment Videos

ASAP: a resource for annotating, curating, comparing, and disseminating genomic data.

Jeremy D Glasner1, Michael Rusch, Paul Liss

  • 1Genome Center of Wisconsin, University of Wisconsin, Madison, WI, USA. glasner@svm.vetmed.wisc.edu

Nucleic Acids Research
|December 31, 2005
PubMed
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The ASAP system enhances community genome annotation and analysis, incorporating new tools like Mauve for improved comparative genomics of enterobacterial pathogens and other genomes.

Area of Science:

  • Genomics
  • Bioinformatics
  • Computational Biology

Background:

  • Community genome annotation and analysis require comprehensive, web-based systems.
  • Existing systems may lack advanced tools for comparative genomics and data curation.

Purpose of the Study:

  • To describe the ASAP (A System for Automated Pathway analysis) web-based system for genome annotation and analysis.
  • To highlight recent improvements and future development challenges for the ASAP system.
  • To showcase the integration of new tools, such as the Mauve genome alignment program.

Main Methods:

  • Utilizing a web-based platform for genome annotation and data analysis.
  • Incorporating advanced algorithms and software, including the Mauve genome alignment program.

Related Experiment Videos

  • Augmenting and curating annotations for enterobacterial pathogen genomes and other genome sequences.

    • Main Results:

    • ASAP facilitates large-scale annotation and curation efforts for diverse genomes.
    • Integration of Mauve improves the display and analysis of related genomes.
    • The system has undergone recent database improvements.

    Conclusions:

    • ASAP is a valuable resource for community genome annotation and analysis.
    • The system's continuous development, including tool integration, enhances its utility.
    • Further development is needed to address future challenges in genome analysis.