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Ensembl 2006.

E Birney1, D Andrews, M Caccamo

  • 1European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SA, UK. birney@ebi.ac.uk

Nucleic Acids Research
|December 31, 2005
PubMed
Summary

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This summary is machine-generated.

The Ensembl project now offers 19 annotated genomes, including new mammalian and yeast species. Enhancements include a redesigned website and improved RNA and human variation data integration.

Area of Science:

  • Bioinformatics
  • Genomics
  • Computational Biology

Background:

  • Ensembl provides integrated genome sequence annotation.
  • The platform has expanded its genomic data offerings.
  • Previous versions focused on a smaller set of species.

Purpose of the Study:

  • To detail the recent expansion and improvements of the Ensembl project.
  • To highlight the integration of new species and data types.
  • To showcase advancements in data presentation and analysis.

Main Methods:

  • Expansion of Ensembl's genome database to include 19 species.
  • Integration of Rhesus macaque, Opossum, Ciona intestinalis, and yeast genomes.
  • Development of a redesigned website and enhanced data visualization tools.

Related Experiment Videos

  • Incorporation of RNA gene, regulatory annotation, and human genome variation data.

    • Main Results:

    • The Ensembl resource now annotates 19 large genome sequences.
    • Significant additions include mammalian (Rhesus macaque, Opossum), chordate (Ciona intestinalis), and yeast genomes.
    • Website redesign improves user experience, with new RNA and human variation data integrated.

    Conclusions:

    • Ensembl continues to be a vital, comprehensive resource for genome annotation.
    • The expanded dataset and improved interface support broader genomic research.
    • Ongoing development ensures Ensembl remains at the forefront of genomic data accessibility.