Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Videos

Tomato Expression Database (TED): a suite of data presentation and analysis tools.

Zhangjun Fei1, Xuemei Tang, Rob Alba

  • 1Boyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY 14853, USA. zfei@vt.edu

Nucleic Acids Research
|December 31, 2005
PubMed
Summary

The Tomato Expression Database (TED) offers integrated tools for analyzing tomato gene expression. Researchers can access microarray and digital expression data for fruit development studies.

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

<i>De novo NFKBIA</i> variants within the N-terminal hotspot: consistent immunophenotype and divergent clinical presentations.

Frontiers in immunology·2026
Same author

Clinical characteristics, autoantibody profiles, and therapeutic outcomes of juvenile systemic sclerosis: an 11-year single-center experience from China.

Frontiers in immunology·2026
Same author

Artificial Intelligence Based High Resolution Melting Analysis for Comprehensive Calreticulin Mutation Screening and Novel Variant Detection in Myeloproliferative Neoplasms.

International journal of laboratory hematology·2026
Same author

Identification of race-specific QTL and candidate genes for Aphanomyces root rot resistance in alfalfa (Medicago sativa L.).

G3 (Bethesda, Md.)·2026
Same author

CD14<sup>+</sup>CXCL10<sup>+</sup> monocytes are associated with peripheral immune network alterations in systemic juvenile idiopathic arthritis: From multiple centers.

Genes & diseases·2026
Same author

Janus kinase inhibitor therapy for the treatment of spondyloenchondrodysplasia with immune dysregulation due to novel <i>ACP5</i> variants: a multicenter study.

Frontiers in immunology·2026

Area of Science:

  • Plant Biology
  • Genomics
  • Bioinformatics

Background:

  • Gene expression data is crucial for understanding plant development.
  • Publicly available datasets require robust management and accessibility tools.
  • Tomato (Solanum lycopersicum) is a model organism for fruit development research.

Purpose of the Study:

  • To present the Tomato Expression Database (TED) as a comprehensive resource for tomato gene expression data.
  • To provide integrated tools for data retrieval, analysis, and visualization.
  • To facilitate research on tomato fruit development and ripening.

Main Methods:

  • Integration of three components: Microarray Data Warehouse, Microarray Expression Database, and Digital Expression Database.
  • Data curation following Minimum Information About a Microarray Experiment (MIAME) guidelines.

Related Experiment Videos

  • Development of web interfaces and analysis tools for user-friendly data access.

    • Main Results:

    • TED houses raw and processed microarray data from various fruit development stages and mutants.
    • The database includes digital expression data from over 150,000 tomato ESTs.
    • Tools for comparing tomato and Arabidopsis digital expression data are available.

    Conclusions:

    • TED serves as a valuable, centralized resource for tomato gene expression research.
    • The database supports detailed analysis of gene function during fruit development and ripening.
    • TED enhances the utility of public tomato expression data for the scientific community.