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Updated: Aug 13, 2026

Malachite Green Assay for the Discovery of Heat-Shock Protein 90 Inhibitors
Published on: January 20, 2023
The topoisomerase II-Hsp90 complex: a new chemotherapeutic target?
Catherine R Barker1, Jane Hamlett, Stephen R Pennington
1The Henry Wellcome Laboratory of Molecular and Cellular Gastroenterology, Division of Gastroenterology, School of Clinical Sciences, The University of Liverpool, Liverpool, United Kingdom.
Abstract:
The modulation of DNA topology by topoisomerase II plays a crucial role during chromosome condensation and segregation in mitosis and has thus become a highly attractive target for chemotherapeutic drugs. However, these drugs are highly toxic, and so new approaches are required. One such strategy is to target topoisomerase II-interacting proteins. Here we report the identification of potential topoisomerase II-associated proteins using immunoprecipitation, followed by 1-D and 2-D gel electrophoresis and MALDI-TOF mass spectrometry. A total of 23 proteins were identified and, of these, 17 were further validated as topoisomerase IIalpha-associated proteins by coimmunoprecipitation and Western blot. Six of the interacting proteins were cellular chaperones, including 3 members of the heat shock protein-90 (Hsp90) family, and so the effect of Hsp90 modulation on the antitumor activity of topoisomerase II drugs was tested using the sulforhodamine B assay, clonogenic assays and a xenograft model. The Hsp90 inhibitors geldanamycin, 17-AAG (17-allylamino-17-demethoxygeldanamycin) and radicicol significantly enhanced the activity of the topoisomerase II poisons etoposide and mitoxantrone in vitro and in vivo. Thus, our method of identifying topoisomerase II-interacting proteins appears to be effective, and at least 1 novel topoisomerase IIalpha-associated protein, Hsp90, may represent a valid drug target in the context of topoisomerase II-directed chemotherapy.
Insights
Researchers identified heat shock protein-90 (Hsp90) as a topoisomerase II-interacting protein. Inhibiting Hsp90 enhanced the antitumor activity of topoisomerase II drugs, suggesting Hsp90 as a novel therapeutic target.
Area of Science:
- Molecular Biology
- Cancer Research
- Drug Discovery
Background:
- Topoisomerase II is crucial for DNA replication and a target for chemotherapy.
- Current topoisomerase II drugs are toxic, necessitating novel therapeutic strategies.
- Targeting topoisomerase II-interacting proteins offers a promising alternative approach.
Purpose of the Study:
- To identify proteins that associate with topoisomerase II.
- To investigate the role of identified proteins in the efficacy of topoisomerase II-targeted therapies.
- To explore heat shock protein-90 (Hsp90) as a potential drug target.
Main Methods:
- Immunoprecipitation followed by mass spectrometry to identify topoisomerase II-associated proteins.
- Co-immunoprecipitation and Western blot to validate protein interactions.
- In vitro and in vivo assays (sulforhodamine B, clonogenic, xenograft) to assess drug efficacy.
Main Results:
- Identified 23 potential topoisomerase II-associated proteins, with 17 validated.
- Discovered six interacting proteins were cellular chaperones, including three Hsp90 family members.
- Hsp90 inhibitors significantly enhanced the antitumor activity of etoposide and mitoxantrone in vitro and in vivo.
Conclusions:
- The method for identifying topoisomerase II-interacting proteins is effective.
- Heat shock protein-90 (Hsp90) is a novel topoisomerase IIalpha-associated protein.
- Hsp90 inhibition represents a potential strategy to improve topoisomerase II-directed chemotherapy.
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