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Related Concept Videos

Translation01:31

Translation

Lesson: Translation
Translation is the process of synthesizing proteins from the genetic information carried by messenger RNA (mRNA). Following transcription, it constitutes the final step in the expression of genes. This process is carried out by ribosomes, complexes of protein and specialized RNA molecules. Ribosomes, transfer RNA (tRNA), and other proteins produce a chain of amino acids—the polypeptide—as the end product of translation.
Translation Produces the Building Blocks of Life
Transfer RNA Synthesis02:36

Transfer RNA Synthesis

One of the unique features of tRNA is the presence of modified bases. In some tRNAs, modified bases account for nearly 20% of the total bases in the molecule. Altogether, these unusual bases protect the tRNA from enzymatic degradation by RNases.
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
tRNA Activation02:26

tRNA Activation

Aminoacyl-tRNA synthetases are present in both eukaryotes and bacteria. Though eukaryotes have 20 different aminoacyl-tRNA synthetases to couple to 20 amino acids, many bacteria do not have genes for all of these aminoacyl-tRNA synthetases. Despite this, they still use all 20 amino acids to synthesize their proteins. For instance, some bacteria do not have the gene encoding the enzyme that couples glutamine with its partner tRNA. In these organisms, one enzyme adds glutamic acid to all of the...
Termination of Translation01:44

Termination of Translation

The large ribosomal subunit has several important structures essential to translation. These include the peptidyl transferase center (PTC) - which is the site where the peptide bond is formed - and a large, internal, water-filled tube through which the nascent polypeptide moves. This latter structure is called the Peptide Exit Tunnel, and it begins at the PTC and spans the body of the large ribosomal subunit. During translation, as the nascent polypeptide chain is synthesized, it passes through...
Transfer RNA Synthesis02:36

Transfer RNA Synthesis

One of the unique features of tRNA is the presence of modified bases. In some tRNAs, modified bases account for nearly 20% of the total bases in the molecule. Altogether, these unusual bases protect the tRNA from enzymatic degradation by RNases.
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
tRNA Activation02:26

tRNA Activation

Aminoacyl-tRNA synthetases are present in both eukaryotes and bacteria. Though eukaryotes have 20 different aminoacyl-tRNA synthetases to couple to 20 amino acids, many bacteria do not have genes for all of these aminoacyl-tRNA synthetases. Despite this, they still use all 20 amino acids to synthesize their proteins. For instance, some bacteria do not have the gene encoding the enzyme that couples glutamine with its partner tRNA. In these organisms, one enzyme adds glutamic acid to all of the...

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Related Experiment Video

Updated: Jun 25, 2026

Isolation of Translating Ribosomes Containing Peptidyl-tRNAs for Functional and Structural Analyses
11:19

Isolation of Translating Ribosomes Containing Peptidyl-tRNAs for Functional and Structural Analyses

Published on: February 26, 2011

Dynamic transition in tRNA is solvent induced.

Gokhan Caliskan1, Robert M Briber, D Thirumalai

  • 1Department of Biophysics, Johns Hopkins University, 3400 North Charles Street, Baltimore, MD 21218-2685, USA.

Journal of the American Chemical Society
|January 5, 2006
PubMed
Summary

Hydrated transfer RNA (tRNA) and lysozyme exhibit similar dynamic transitions, suggesting solvent induction. Methyl groups appear less critical for this transition in macromolecules.

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Area of Science:

  • Biophysics
  • Structural Biology
  • Biochemistry

Background:

  • Proteins and RNA possess distinct architectures and backbone structures.
  • Biological macromolecules undergo dynamic transitions influenced by their environment.
  • Understanding these transitions is key to comprehending molecular function.

Purpose of the Study:

  • To investigate the dynamics of transfer RNA (tRNA) using neutron scattering spectroscopy.
  • To compare the dynamic behavior of tRNA with that of proteins, such as lysozyme.
  • To explore the role of solvent and methyl groups in macromolecular dynamics.

Main Methods:

  • Neutron scattering spectroscopy was employed to study tRNA dynamics.
  • Hydrated tRNA and hydrated lysozyme were analyzed under similar conditions.
  • Comparative analysis of dynamic transition temperatures was performed.

Main Results:

  • Hydrated tRNA undergoes a dynamic transition at the same temperature as hydrated lysozyme.
  • This similarity supports a solvent-induced mechanism for the dynamic transition.
  • tRNA, lacking significant methyl groups, shows that they are not the primary drivers of this transition.

Conclusions:

  • The dynamic transition in biological macromolecules like tRNA and proteins is primarily solvent-induced.
  • Methyl groups are likely not the main contributors to the general dynamic transition.
  • Methyl groups may, however, account for observed differences in low-temperature dynamics between tRNA and lysozyme.