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Published on: April 21, 2023
An evolutionarily conserved function of proliferating cell nuclear antigen for Cdt1 degradation by the Cul4-Ddb1
1Department of Biochemistry and Biophysics, Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, 27516-7295, USA.
Abstract:
The DNA replication licensing factor Cdt1 is degraded by the ubiquitin-proteasome pathway during S phase of the cell cycle, to ensure one round of DNA replication during each cell division and in response to DNA damage to halt DNA replication. Constitutive expression of Cdt1 causes DNA re-replication and is associated with the development of a subset of human non-small cell-lung carcinomas. In mammalian cells, DNA damage-induced Cdt1 degradation is catalyzed by the Cul4-Ddb1-Roc1 E3 ubiquitin ligase. We report here that overexpression of the proliferating cell nuclear antigen (PCNA) inhibitory domain from the CDK inhibitors p21 and p57, but not the CDK-cyclin inhibitory domain, blocked Cdt1 degradation in cultured mammalian cells after UV irradiation. In vivo soluble Cdt1 and PCNA co-elute by gel filtration and associate with each other physically. Silencing PCNA in cultured mammalian cells or repression of pcn1 expression in fission yeast blocked Cdt1 degradation in response to DNA damage. Unexpectedly, deletion of Ddb1 in fission yeast cells also accumulated Cdt1 in the absence of DNA damage. We suggest that the Cul4-Ddb1 ligase evolved to ubiquitinate Cdt1 during normal cell growth as well as in response to DNA damage and a separate E3 ligase, possibly SCF(Skp2), evolved to either share or take over the function of Cdt1 ubiquitination during normal cell growth and that PCNA is involved in mediating Cdt1 degradation by the Cul4-Ddb1 ligase in response to DNA damage.
Insights
The DNA replication factor Cdt1 is degraded by the Cul4-Ddb1 E3 ligase. Proliferating cell nuclear antigen (PCNA) is crucial for Cdt1 degradation in response to DNA damage, preventing uncontrolled DNA replication.
Area of Science:
- Cell Biology
- Molecular Biology
- Cancer Research
Background:
- Cdt1 is a DNA replication licensing factor degraded during S phase and upon DNA damage to prevent re-replication.
- Constitutive Cdt1 expression is linked to non-small cell lung carcinoma.
- Cul4-Ddb1-Roc1 is the E3 ubiquitin ligase catalyzing DNA damage-induced Cdt1 degradation in mammals.
Purpose of the Study:
- To investigate the role of PCNA in Cdt1 degradation.
- To elucidate the mechanism of Cdt1 regulation by E3 ligases.
- To understand Cdt1's role in cell cycle control and DNA damage response.
Main Methods:
- Overexpression of PCNA inhibitory domains in cultured mammalian cells.
- UV irradiation to induce DNA damage.
- Co-elution and physical association assays for Cdt1 and PCNA.
- PCNA silencing in mammalian cells and pcn1 repression in fission yeast.
- Ddb1 deletion in fission yeast.
Main Results:
- PCNA inhibitory domains blocked UV-induced Cdt1 degradation.
- Cdt1 and PCNA physically associate in vivo.
- PCNA silencing or repression blocked DNA damage-induced Cdt1 degradation.
- Ddb1 deletion led to Cdt1 accumulation even without DNA damage.
Conclusions:
- PCNA mediates Cdt1 degradation by the Cul4-Ddb1 ligase in response to DNA damage.
- The Cul4-Ddb1 ligase ubiquitinates Cdt1 during normal growth and DNA damage.
- A separate E3 ligase, possibly SCF(Skp2), may handle Cdt1 ubiquitination during normal growth.
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