Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Videos

BioShell--a package of tools for structural biology computations.

Dominik Gront1, Andrzej Kolinski

  • 1Faculty of Chemistry, Warsaw University Pasteura 1, 02-093 Warsaw, Poland. dgront@chem.uw.edu.pl

Bioinformatics (Oxford, England)
|January 13, 2006
PubMed
Summary

BioShell is a new suite of programs that extends UNIX shell flexibility for protein structure modeling. It enables the integration of various molecular modeling procedures into a single pipeline for streamlined workflows.

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Exploring P450 superfamily diversity with P450Atlas - Online tool for automated subfamily assignment.

Protein science : a publication of the Protein Society·2025
Same author

Multiscale modeling of protofilament structures: A case study on insulin amyloid aggregates.

International journal of biological macromolecules·2024
Same author

deepBBQ: A Deep Learning Approach to the Protein Backbone Reconstruction.

Biomolecules·2024
Same author

Importance of Secondary Structure Data in Large Scale Protein Modeling Using Low-Resolution SURPASS Method.

Methods in molecular biology (Clifton, N.J.)·2024
Same author

Exploring protein functions from structural flexibility using CABS-flex modeling.

Protein science : a publication of the Protein Society·2024
Same author

Integrative modeling of diverse protein-peptide systems using CABS-dock.

PLoS computational biology·2023

Area of Science:

  • Computational biology
  • Structural bioinformatics
  • Molecular modeling

Background:

  • Protein structure modeling is crucial in biological research.
  • Existing tools often require complex integration for multi-step procedures.
  • A need exists for flexible and integrated solutions in molecular modeling.

Purpose of the Study:

  • To introduce BioShell, a novel suite of programs for common tasks in protein structure modeling.
  • To leverage UNIX shell flexibility for enhanced molecular modeling workflows.
  • To facilitate the integration of diverse molecular modeling procedures.

Main Methods:

  • BioShell is designed as an extension of the UNIX shell.
  • It provides a suite of programs for executing common modeling tasks.

Related Experiment Videos

  • Workflows are constructed by integrating these programs.

    • Main Results:

    • BioShell offers a flexible approach to molecular modeling.
    • It simplifies the execution of common tasks in protein structure modeling.
    • Complex modeling procedures can be integrated into a single pipeline.

    Conclusions:

    • BioShell enhances protein structure modeling by providing a flexible, integrated pipeline.
    • Its design based on UNIX shell principles ensures adaptability and ease of use.
    • The suite facilitates streamlined and efficient molecular modeling workflows.