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PeroxiBase: a class III plant peroxidase database.

Nenad Bakalovic1, Filippo Passardi, Vassilios Ioannidis

  • 1Laboratory of Plant Physiology, University of Geneva, Quai Ernest-Ansermet 30, CH-1211 Geneva 4, Switzerland.

Phytochemistry
|January 31, 2006
PubMed
Summary

A new database, PeroxiBase, centralizes plant peroxidase sequences and data. This resource aids researchers in understanding plant growth, development, and environmental interactions, facilitating new applications.

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Area of Science:

  • Plant biology
  • Biochemistry
  • Bioinformatics

Background:

  • Class III plant peroxidases are crucial for plant physiology and development.
  • Their diverse functions remain incompletely understood.
  • Existing sequence data is fragmented across repositories, hindering research.

Purpose of the Study:

  • To create a centralized, accessible database for plant peroxidase sequences.
  • To facilitate the study and comparison of plant peroxidases across species.
  • To support ongoing research in plant peroxidase function, structure, and phylogeny.

Main Methods:

  • Development of a dedicated web server for PeroxiBase.
  • Implementation of tools for sequence querying, classification, and submission.

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  • Consolidation of existing plant peroxidase sequence data.

    • Main Results:

    • Launch of PeroxiBase, a comprehensive database for plant peroxidases.
    • Improved accessibility to plant peroxidase sequences and associated data.
    • Provision of tools for enhanced data analysis and submission.

    Conclusions:

    • PeroxiBase addresses the need for a unified resource in plant peroxidase research.
    • The database will accelerate understanding of plant growth, development, and environmental interactions.
    • It enables comparative analyses crucial for discovering peroxidase functions and applications.