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Messenger RNAs under differential translational control in Ki-ras-transformed cells
Jean Spence1, Brendan M Duggan, Colleen Eckhardt
1Sidney Kimmel Cancer Center, San Diego, CA, USA. jlspence@san.rr.com
Abstract:
Microarrays have been used extensively to identify differential gene expression at the level of transcriptional control in oncogenesis. However, increasing evidence indicates that changes in translational control are critical to oncogenic transformation. This study identifies mRNA transcripts that are differentially regulated, primarily at the level of translation, in the immortalized human embryonic prostate epithelial cell line 267B1 and the v-Ki-ras-transformed counterpart by comparing total mRNA to polysome-bound mRNA by using Affymetrix oligonucleotide microarrays. Among the transcripts that were identified were those encoding proteins involved in DNA replication, cell cycle control, cell-to-cell interactions, electron transport, G protein signaling, and translation. Many of these proteins are known to contribute to oncogenesis or have the potential to contribute to oncogenesis. Differential expression of RNA-binding proteins and the presence of highly conserved motifs in the 5' and 3' untranslated regions of the mRNAs are consistent with multiple pathways and mechanisms governing the changes in translational control. Although Alu sequences were found to be associated with increased translation in transformed cells, an evolutionarily conserved motif was identified in the 3' untranslated regions of ephrinB1, calreticulin, integrin alpha3, and mucin3B that was associated with decreased polysome association in 267B1/Ki-ras.
Insights
This study reveals that cancer development involves significant changes in how genes are translated into proteins, not just transcribed. Researchers identified specific mRNA targets regulated at the translation level, offering new insights into oncogenesis.
Area of Science:
- Molecular Biology
- Cancer Research
- Translational Control
Background:
- Gene expression changes are crucial in cancer.
- While transcriptional control is well-studied, translational control's role in oncogenesis is increasingly recognized.
- Understanding translational regulation provides new avenues for cancer therapy.
Purpose of the Study:
- To identify mRNA transcripts differentially regulated at the translational level during oncogenic transformation.
- To compare translational profiles between normal and v-Ki-ras-transformed prostate epithelial cells.
- To elucidate mechanisms governing translational control in cancer.
Main Methods:
- Utilized Affymetrix oligonucleotide microarrays to compare total mRNA and polysome-bound mRNA.
- Analyzed mRNA from an immortalized human prostate cell line (267B1) and its v-Ki-ras-transformed counterpart.
- Investigated RNA-binding proteins and conserved motifs in untranslated regions of mRNAs.
Main Results:
- Identified differentially translated transcripts encoding proteins involved in DNA replication, cell cycle, cell adhesion, and signaling pathways.
- Observed differential expression of RNA-binding proteins.
- Found Alu sequences associated with increased translation in transformed cells.
- Discovered a conserved motif in 3' UTRs linked to decreased polysome association for specific genes (ephrinB1, calreticulin, integrin alpha3, mucin3B).
Conclusions:
- Translational control plays a significant role in oncogenic transformation.
- Specific mRNA motifs and RNA-binding proteins are involved in regulating translation during cancer development.
- Findings highlight potential therapeutic targets by modulating translational control in cancer.
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