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A Rapid Strategy for the Isolation of New Faustoviruses from Environmental Samples Using Vermamoeba vermiformis
Published on: June 4, 2016
Mimivirus and the emerging concept of "giant" virus
Jean-Michel Claverie1, Hiroyuki Ogata, Stéphane Audic
1Information Génomique et Structurale, CNRS UPR 2589, IBSM, Parc Scientifique de Luminy, 163 Avenue de Luminy, Case 934, 13288 Marseille Cedex 9, France. Jean-Michel.Claverie@igs.cnrs-mrs.fr
Abstract:
The recently discovered Acanthamoeba polyphaga Mimivirus is the largest known DNA virus. Its particle size (750 nm), genome length (1.2 million bp) and large gene repertoire (911 protein coding genes) blur the established boundaries between viruses and parasitic cellular organisms. In addition, the analysis of its genome sequence identified many types of genes never before encountered in a virus, including aminoacyl-tRNA synthetases and other central components of the translation machinery previously thought to be the signature of cellular organisms. In this article, we examine how the finding of such a giant virus might durably influence the way we look at microbial biodiversity, and lead us to revise the classification of microbial domains and life forms. We propose to introduce the word "girus" to recognize the intermediate status of these giant DNA viruses, the genome complexity of which makes them closer to small parasitic prokaryotes than to regular viruses.
Insights
The discovery of Acanthamoeba polyphaga Mimivirus, a giant DNA virus, challenges traditional definitions of viruses and cellular life. Its complex genome suggests an intermediate status, potentially requiring new classifications for microbial biodiversity.
Area of Science:
- Microbiology
- Virology
- Genomics
Background:
- The discovery of Acanthamoeba polyphaga Mimivirus represents a significant finding in virology.
- This giant DNA virus possesses unprecedented particle size, genome length, and gene repertoire.
Purpose of the Study:
- To analyze the genome sequence of Acanthamoeba polyphaga Mimivirus.
- To examine the implications of this giant virus on microbial biodiversity and classification.
- To propose a new term for these unique viruses.
Main Methods:
- Genome sequencing and analysis of Acanthamoeba polyphaga Mimivirus.
- Comparative genomics to identify novel viral genes.
- Literature review on microbial classification and biodiversity.
Main Results:
- The virus possesses a 1.2 million bp genome with 911 protein-coding genes.
- Genes previously thought exclusive to cellular organisms, like aminoacyl-tRNA synthetases, were identified.
- The virus blurs the lines between viruses and parasitic cellular organisms.
Conclusions:
- The existence of Acanthamoeba polyphaga Mimivirus necessitates a re-evaluation of microbial life forms.
- A new classification term, 'girus', is proposed for these giant DNA viruses.
- These viruses represent an intermediate evolutionary step between viruses and prokaryotes.
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