A nonsense mutation of PEPD in four Amish children with prolidase deficiency

Heng Wang1, Biji T Kurien, David Lundgren

  • 1Das Deutsch Center (DDC) Clinic for Special Needs Children, Middlefield, Ohio 44062, USA. wang@ddclinic.org

Insights

This study identifies a novel mutation in the PEPD gene causing severe prolidase deficiency in Amish children. The findings highlight a unique presentation of the disorder in the United States.

Area of Science:

  • Biochemistry
  • Genetics
  • Pediatrics

Background:

  • Prolidase deficiency is a rare genetic disorder affecting cytosolic enzyme activity.
  • The peptidase D (PEPD) gene encodes prolidase, crucial for peptide hydrolysis.
  • Previous reports predominantly feature skin ulcers as the primary symptom.

Purpose of the Study:

  • To report the first cases of prolidase deficiency in the Amish population in the United States.
  • To characterize the clinical and genetic features of severe prolidase deficiency in affected children.
  • To investigate the molecular basis of the observed severe phenotype.

Main Methods:

  • Clinical evaluation of four Amish children with suspected prolidase deficiency.
  • Biochemical assays to measure prolidase activity.
  • Genomic DNA sequencing of the PEPD gene to identify mutations.

Main Results:

  • Four Amish children presented with a severe phenotype including infections, hepatosplenomegaly, and thrombocytopenia, differing from typical presentations.
  • All patients exhibited characteristic facial features, skin ulcers, multisystem involvement, and massive imidodipeptiduria.
  • A homozygous single nucleotide mutation (c.793 T > C) in exon 11 of the PEPD gene, leading to a premature stop-codon (p.R265X), was identified in all patients.

Conclusions:

  • This study reports the first cases of prolidase deficiency in the Amish population and the United States.
  • The identified PEPD gene mutation (p.R265X) is associated with a severe, multisystemic phenotype.
  • The specific type of PEPD mutation may influence the severity of prolidase deficiency.

Related Concept Videos

Mutations01:39

Mutations

Overview
Protein Import into the Peroxisomes01:27

Protein Import into the Peroxisomes

Cells contain membrane-bound organelles called peroxisomes that oxidize organic molecules by transferring hydrogen atoms to oxygen, producing hydrogen peroxide. Peroxisomes enzymatically convert the released hydrogen peroxide into water and oxygen.
Peroxisomal Protein Import:
Peroxisomes lack the genetic machinery required to code for their own proteins. Hence, most peroxisomal membrane, lumenal and transmembrane proteins are synthesized in the cytoplasm or ER and transported to the peroxisome...
Pleiotropy01:33

Pleiotropy

Pleiotropy is the phenomenon in which a single gene impacts multiple, seemingly unrelated phenotypic traits. For example, defects in the SOX10 gene cause Waardenburg Syndrome Type 4, or WS4, which can cause defects in pigmentation, hearing impairments, and an absence of intestinal contractions necessary for elimination. This diversity of phenotypes results from the expression pattern of SOX10 in early embryonic and fetal development. SOX10 is found in neural crest cells that form melanocytes,...
Lethal Alleles02:41

Lethal Alleles

Agouti: A Lethal Allele
Lucien Cuénot discovered lethal alleles in 1905 while studying the inheritance of coat color in mice. The agouti gene is responsible for the color of the coat in mice. This gene codes for an agouti-signaling protein, which is responsible for melanin distribution in mammals. The wild-type allele gives rise to gray-brown coat color in mice, while the mutant allele gives rise to yellow coat color. In addition to coat color, the agouti gene is associated with the yellow...
Pedigree Analysis01:35

Pedigree Analysis

Overview
Lysosomal Hydrolases01:22

Lysosomal Hydrolases

Lysosomes are the site for the degradation of macromolecules and biological polymers released during membrane trafficking events such as secretory, endocytic, autophagic, and phagocytic pathways. The membrane-enclosed area of the lysosome, called the lumen, contains hydrolytic enzymes active in an acidic environment. These acid hydrolases are functional at a pH between 4.5 and 5 and are involved in cellular processes such as cell signaling, energy metabolism, restoration of the plasma membrane,...