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Updated: Aug 11, 2026

Automated 3D Optical Coherence Tomography to Elucidate Biofilm Morphogenesis Over Large Spatial Scales
Published on: August 21, 2019
Ultrasonic imaging of biofilms utilizing echoes from the biofilm/air interface
Andrew K Holmes1, Johanna Laybourn-Parry, Jacqueline D Parry
1School of Electrical and Electronic Engineering, University of Nottingham, Nottingham NG7 2RD, UK. eezakh@gwmail.nottingham.ac.uk
Abstract:
Ultrasonic imaging of biofilms in water is difficult due to the very low contrast in acoustic impedance between the biofilm and water. In this paper, biofilms exposed to moist air are scanned through the substrate in order to obtain echoes from the biofilm/air interface. A 50 MHz scanning system was used to scan 1 mm x 1 mm areas of biofilms in a 10 microm grid pattern. Two fast Fourier transform (FFT) based methods for enhancement of the film thickness measurement resolution are compared. Using these techniques, the surface topography of biofilms with thickness less than the acoustic wavelength can be imaged.

