MicroRNA-guided processing impairs Plum pox virus replication, but the virus readily evolves to escape this silencing

Carmen Simón-Mateo1, Juan Antonio García

  • 1Centro Nacional de Biotecnología-CSIC, Campus Universidad Autónoma de Madrid, Spain.

Journal of Virology
|February 14, 2006
PubMed

Insights

Plum pox virus (PPV) chimeras with microRNA (miRNA) target sites showed reduced infectivity in host plants. Virus infectivity was influenced by miRNA sequence, insertion site, and host plant, with escape mutations observed.

Area of Science:

  • Plant virology
  • Molecular biology
  • RNA silencing mechanisms

Background:

  • MicroRNAs (miRNAs) are key regulators of gene expression through RNA silencing.
  • RNA silencing pathways are increasingly recognized for their role in antiviral defense in plants.
  • Plum pox virus (PPV) is a significant pathogen affecting fruit trees.

Purpose of the Study:

  • To investigate the impact of miRNA target sequences on Plum pox virus (PPV) infectivity.
  • To determine if miRNA-guided RNA silencing can interfere with PPV replication in different host plants.
  • To analyze the mechanisms by which PPV might evade miRNA-mediated antiviral defense.

Main Methods:

  • Construction of PPV chimeras containing functional target sequences for Arabidopsis miRNAs (miR171, miR167, miR159).
  • Infection assays of PPV chimeras in three different host plants.
  • Analysis of viral infectivity and replication in the presence and absence of host miRNA activity.
  • Evaluation of PPV chimera behavior in transgenic plants expressing the P1/HC-Pro silencing suppressor.
  • Sequencing of viral RNA to identify mutations in miRNA target sequences.

Main Results:

  • Several PPV chimeras with miRNA target sequences exhibited significantly impaired infectivity compared to controls.
  • The effect on infectivity varied across different host plants, depending on the specific miRNA sequence and its insertion site within the PPV genome.
  • Infection by PPV chimeras was less affected in transgenic plants expressing the P1/HC-Pro silencing suppressor.
  • PPV chimeras rapidly evolved mutations within the miRNA target sequences, particularly in the 5'-terminal region complementary to the miRNA, to escape RNA silencing.

Conclusions:

  • MicroRNA-guided RNA silencing can negatively impact Plum pox virus infectivity in susceptible host plants.
  • PPV employs strategies, including mutations in target sequences, to overcome miRNA-mediated antiviral defense.
  • The effectiveness of miRNA-mediated antiviral defense against PPV is influenced by host factors and viral genetic elements.

Related Concept Videos

MicroRNAs01:22

MicroRNAs

MicroRNA (miRNA) are short, regulatory RNA transcribed from introns (non-coding regions of a gene) or intergenic regions (stretches of DNA present between genes). Several processing steps are required to form biologically active, mature miRNA. The initial transcript, called primary miRNA (pri-mRNA), base-pairs with itself, forming a stem-loop structure. Within the nucleus, an endonuclease enzyme, called Drosha, shortens the stem-loop structure into hairpin-shaped pre-miRNA. After the pre-miRNA...
MicroRNAs01:22

MicroRNAs

MicroRNA (miRNA) are short, regulatory RNA transcribed from introns—non-coding regions of a gene—or intergenic regions—stretches of DNA present between genes. Several processing steps are required to form biologically active, mature miRNA. The initial transcript, called primary miRNA (pri-mRNA), base-pairs with itself forming a stem-loop structure. Within the nucleus, an endonuclease enzyme, called Drosha, shortens the stem-loop structure into hairpin-shaped pre-miRNA. After the pre-miRNA ends...
RNA Interference01:23

RNA Interference

RNA interference (RNAi) is a process in which a small non-coding RNA molecule blocks the post-transcriptional expression of a gene by binding to its messenger RNA (mRNA) and preventing the protein from being translated.
This process occurs naturally in cells, often through the activity of genomically-encoded microRNAs. Researchers can take advantage of this mechanism by introducing synthetic RNAs to deactivate specific genes for research or therapeutic purposes. For example, RNAi could be used...
Experimental RNAi02:15

Experimental RNAi

RNA interference (RNAi) is a cellular mechanism that inhibits gene expression by suppressing its transcription or activating the RNA degradation process. The mechanism was discovered by Andrew Fire and Craig Mello in 1998 in plants. Today, it is observed in almost all eukaryotes, including protozoa, flies, nematodes, insects, parasites, and mammals. This precise cellular mechanism of gene silencing has been developed into a technique that provides an efficient way to identify and determine the...
piRNA - Piwi-interacting RNAs02:57

piRNA - Piwi-interacting RNAs

PIWI-interacting RNAs, or piRNAs, are the most abundant short non-coding RNAs. More than 20,000 genes have been found in humans that code for piRNAs while only 2000 genes have been found for miRNAs. piRNAs can act at the transcriptional and post-transcriptional levels and have a vital role in silencing transposable elements present in germ cells. They are also involved in epigenetic silencing and activation. Previously, they were thought to function only in germ cells but new evidence suggests...
siRNA - Small Interfering RNAs02:30

siRNA - Small Interfering RNAs

Small interfering RNAs, or siRNAs, are short regulatory RNA molecules that can silence genes post-transcriptionally, as well as the transcriptional level in some cases. siRNAs are important for protecting cells against viral infections and silencing transposable genetic elements.
In the cytoplasm, siRNA is processed from a double-stranded RNA, which comes from either endogenous DNA transcription or exogenous sources like a virus. This double-stranded RNA is then cleaved by the ATP-dependent...