Molecular recognition of p53 and MDM2 by USP7/HAUSP
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Updated: Aug 11, 2026

Purification of Ubiquitinated p53 Proteins from Mammalian Cells
Published on: March 21, 2022
Yi Sheng1, Vivian Saridakis, Feroz Sarkari
1Ontario Cancer Institute, Department of Medical Biophysics, 101 College Street, Toronto, Ontario, Canada M5G 1L7.
Abstract:
The ubiquitin-specific protease, USP7, has key roles in the p53 pathway whereby it stabilizes both p53 and MDM2. We show that the N-terminal domain of USP7 binds two closely spaced 4-residue sites in both p53 and MDM2, falling between p53 residues 359-367 and MDM2 residues 147-159. Cocrystal structures with USP7 were determined for both p53 peptides and for one MDM2 peptide. These peptides bind the same surface of USP7 as Epstein-Barr nuclear antigen-1, explaining the competitive nature of the interactions. The structures and mutagenesis data indicate a preference for a P/AXXS motif in peptides that bind USP7. Contacts made by serine are identical and crucial for all peptides, and Trp165 in the peptide-binding pocket of USP7 is also crucial. These results help to elucidate the mechanism of substrate recognition by USP7 and the regulation of the p53 pathway.
Insights
Ubiquitin-specific protease 7 (USP7) stabilizes p53 and MDM2 by binding specific sites. Structural and mutagenesis data reveal a P/AXXS motif critical for USP7 substrate recognition in the p53 pathway.
Area of Science:
- Biochemistry
- Molecular Biology
- Structural Biology
Background:
- The ubiquitin-specific protease, USP7, plays a crucial role in regulating the p53 pathway.
- USP7 stabilizes key tumor suppressor proteins, p53 and MDM2, impacting cellular responses to DNA damage.
Purpose of the Study:
- To elucidate the molecular mechanism of substrate recognition by USP7.
- To understand how USP7 interacts with p53 and MDM2.
Main Methods:
- Cocrystallization of USP7 with p53 and MDM2 peptides.
- X-ray crystallography to determine the binding mode.
- Site-directed mutagenesis to identify critical residues.
Main Results:
- USP7's N-terminal domain binds two distinct 4-residue sites in both p53 and MDM2.
- Cocrystal structures reveal the binding interface and a conserved P/AXXS motif in substrates.
- Serine contacts and Trp165 in USP7 are essential for peptide binding.
Conclusions:
- USP7 recognizes its substrates, p53 and MDM2, through specific peptide motifs and binding pockets.
- These findings provide mechanistic insights into USP7 substrate recognition and p53 pathway regulation.
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