Related Experiment Video
Updated: Aug 11, 2026

Modeling an Enzyme Active Site using Molecular Visualization Freeware
Published on: December 25, 2021
Metadynamics as a tool for exploring free energy landscapes of chemical reactions
Bernd Ensing1, Marco De Vivo, Zhiwei Liu
1Center for Molecular Modeling and Department of Chemistry, University of Pennsylvania, 231 South 34th Street, Philadelphia, Pennsylvania 19104-6323, USA. ensing@cmm.upenn.edu
Abstract:
The metadynamics or hills method is a relatively new molecular dynamics technique aimed to enhance the sampling of separated regions in phase space and map out the underlying free energy landscape as a function of a small number of order parameters or collective variables. The high efficiency allows for the application of metadynamics in combination with first principles dynamics methods, in particular with Car-Parrinello molecular dynamics, to study processes in which changes in the electronic structure play a dominant role, such as chemical reactions. The option to choose several independent collective variables is important to tackle complex and concerted transformations that lack an obvious a priori choice for a single reaction coordinate. In this Account, we discuss the role of metadynamics in the search of transition states, local minima, reaction paths, free energy profiles, and reaction coordinates among a growing list of alternative methods.
Related Concept Videos
An Introduction to Free Energy
Gibbs Free Energy and Thermodynamic Favorability
Free Energy and Equilibrium
The reaction quotient, Q, is a convenient measure of the status of an...
Free Energy and Equilibrium
Recall that Q is the numerical value of the mass action expression...
Calculating Standard Free Energy Changes
Gibbs Free Energy

