Related Experiment Video
Updated: Aug 11, 2026

Systems Biology of Metabolic Regulation by Estrogen Receptor Signaling in Breast Cancer
Published on: March 17, 2016
An estrogen receptor-negative breast cancer subset characterized by a hormonally regulated transcriptional program
1Department of Pathology, Memorial Sloan-Kettering Cancer Center, New York, NY 10021, USA.
Abstract:
Little is known of the underlying biology of estrogen receptor-negative, progesterone receptor-negative (ER(-)/PR(-)) breast cancer (BC), and few targeted therapies are available. Clinical heterogeneity of ER(-)/PR(-) tumors suggests that molecular subsets exist. We performed genome-wide expression analysis of 99 primary BC samples and eight BC cell lines in an effort to reveal distinct subsets, provide insight into their biology and potentially identify new therapeutic targets. We identified a subset of ER(-)/PR(-) tumors with paradoxical expression of genes known to be either direct targets of ER, responsive to estrogen, or typically expressed in ER(+) BC. Differentially expressed genes included SPDEF, FOXA1, XBP1, CYB5, TFF3, NAT1, APOD, ALCAM and AR (P<0.001). A classification model based on the expression signature of this tumor class identified molecularly similar BCs in an independent human BC data set and among BC cell lines (MDA-MB-453). This cell line demonstrated a proliferative response to androgen in an androgen receptor-dependent and ER-independent manner. In addition, the androgen-induced transcriptional program of MDA-MB-453 significantly overlapped the molecular signature of the unique ER(-)/PR(-) subclass of human tumors. This subset of BCs, characterized by a hormonally regulated transcriptional program and response to androgen, suggests the potential for therapeutic strategies targeting the androgen signaling pathway.
Insights
Researchers discovered a unique subset of estrogen receptor-negative, progesterone receptor-negative breast cancer. This subtype shows hormonal regulation and responds to androgen, suggesting new therapeutic targets for this aggressive cancer.
Area of Science:
- Oncology
- Genomics
- Molecular Biology
Background:
- Estrogen receptor-negative, progesterone receptor-negative (ER(-)/PR(-)) breast cancer (BC) lacks targeted therapies.
- Tumor heterogeneity in ER(-)/PR(-) BC suggests underlying molecular subtypes.
- Understanding the biology of these subtypes is crucial for developing new treatments.
Purpose of the Study:
- To identify distinct molecular subsets within ER(-)/PR(-) breast cancer.
- To gain insights into the biology of these subsets.
- To identify potential novel therapeutic targets for ER(-)/PR(-) BC.
Main Methods:
- Genome-wide expression analysis of 99 primary breast cancer samples and 8 BC cell lines.
- Development of a classification model based on gene expression signatures.
- Validation in an independent human BC dataset and cell line models.
Main Results:
- A subset of ER(-)/PR(-) tumors exhibited paradoxical expression of estrogen-responsive genes.
- Key differentially expressed genes included SPDEF, FOXA1, XBP1, and AR.
- An identified cell line (MDA-MB-453) showed androgen-dependent proliferation, independent of ER, mirroring the tumor subset's signature.
Conclusions:
- A distinct molecular subtype of ER(-)/PR(-) breast cancer is characterized by a hormonally regulated transcriptional program.
- This subtype exhibits responsiveness to androgen.
- Targeting the androgen signaling pathway presents a potential therapeutic strategy for this specific breast cancer subset.
Related Concept Videos
Transducer Mechanism: Nuclear Receptors
About 48 different soluble family members of nuclear receptors are identified that can be divided into two main classes:
Mitogens and the Cell Cycle
Targeted Cancer Therapies
There are several types of targeted therapies against specific...
Negative Regulator Molecules
Target Cell Response to Hormones
Notably, the cellular response can be regulated by altering the number of receptors expressed in the cell. For example, prolonged exposure to elevated hormone levels results in a gradual decline or down-regulation in the number of receptors for that specific hormone on the cell surface. Conversely, in response to low hormone levels, cells may use up-regulation, producing an...
Master Transcription Regulators
