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Updated: Aug 11, 2026

Strand-Specific Analysis of Proteins at Replicating DNA Strands by Enrichment and Sequencing of Protein-Associated Nascent DNA Method
Published on: May 2, 2025
Functional roles of p12, the fourth subunit of human DNA polymerase delta
1Department of Biochemistry and Molecular Biology, New York Medical College, Valhalla, NY 10595, USA.
Insights
The p12 subunit of DNA polymerase delta (pol delta) stabilizes the enzyme complex and is crucial for its interaction with proliferating cell nuclear antigen (PCNA), enhancing DNA replication. Both p12 and p68 subunits are vital for optimal pol delta activity.
Area of Science:
- Molecular Biology
- Biochemistry
- Genetics
Background:
- Mammalian DNA polymerase delta (pol delta) is essential for chromosomal DNA replication.
- Pol delta comprises four subunits: p125 (catalytic), p50, p68, and p12.
Purpose of the Study:
- To investigate the functional roles of the p12 subunit in pol delta.
- To elucidate the interactions of p12 with other pol delta subunits and with PCNA.
Main Methods:
- Yeast two-hybrid assays and pulldown assays to determine inter-subunit interactions.
- Binding assays and site-directed mutagenesis to identify PCNA-binding motifs.
- Analysis of recombinant pol delta activity with wild-type and mutant p12 subunits.
Main Results:
- p12 interacts with both p125 and p50 subunits, potentially stabilizing their association.
- p12 is a novel PCNA-binding protein, with a motif identified at its N-terminus.
- p12 contributes to PCNA-dependent pol delta activity, and both p12 and p68 are required for optimal enzyme function.
Conclusions:
- The p12-PCNA interaction is functional and contributes to DNA replication.
- Pol delta interacts with PCNA via a divalent mechanism involving both p12 and p68 subunits.
- p12 may stabilize the overall pol delta-PCNA complex and the pol delta enzyme itself.
Abstract:
Mammalian DNA polymerase delta (pol delta), a key enzyme of chromosomal DNA replication, consists of four subunits as follows: the catalytic subunit; p125, which is tightly associated with the p50 subunit; p68, a proliferating cell nuclear antigen (PCNA)-binding protein; and a fourth subunit, p12. In this study, the functional roles of the p12 subunit of pol delta were studied. The inter-subunit interactions of the p12 subunit were determined by yeast two-hybrid assays and by pulldown assays. These assays revealed that p12 interacts with p125 as well as p50. This dual interaction of p12 suggests that it may serve to stabilize the p125-p50 interaction. p12 was shown to be a novel PCNA-binding protein. This was confirmed by identification of a PCNA-binding motif at its N terminus by binding assays and by site-directed mutagenesis. The activities and reaction products of recombinant pol delta containing a p12 mutant defective in PCNA binding, as well as purified recombinant pol delta and its subassemblies, were analyzed. Our results indicate that p12 contributes to PCNA-dependent pol delta activity, i.e. the p12-PCNA interaction is functional. Our data indicate that both p12 and p68 are required for optimal pol delta activity. This supports the hypothesis that the interaction between pol delta and PCNA is a divalent one that involves p12 and p68. We propose a model in which pol delta interacts with PCNA via at least two of its subunits, and one in which p12 could play a role in stabilizing the overall pol delta-PCNA complex as well as pol delta itself.
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