Functional roles of p12, the fourth subunit of human DNA polymerase delta

Hao Li1, Bin Xie, Yajing Zhou

  • 1Department of Biochemistry and Molecular Biology, New York Medical College, Valhalla, NY 10595, USA.

Insights

The p12 subunit of DNA polymerase delta (pol delta) stabilizes the enzyme complex and is crucial for its interaction with proliferating cell nuclear antigen (PCNA), enhancing DNA replication. Both p12 and p68 subunits are vital for optimal pol delta activity.

Area of Science:

  • Molecular Biology
  • Biochemistry
  • Genetics

Background:

  • Mammalian DNA polymerase delta (pol delta) is essential for chromosomal DNA replication.
  • Pol delta comprises four subunits: p125 (catalytic), p50, p68, and p12.

Purpose of the Study:

  • To investigate the functional roles of the p12 subunit in pol delta.
  • To elucidate the interactions of p12 with other pol delta subunits and with PCNA.

Main Methods:

  • Yeast two-hybrid assays and pulldown assays to determine inter-subunit interactions.
  • Binding assays and site-directed mutagenesis to identify PCNA-binding motifs.
  • Analysis of recombinant pol delta activity with wild-type and mutant p12 subunits.

Main Results:

  • p12 interacts with both p125 and p50 subunits, potentially stabilizing their association.
  • p12 is a novel PCNA-binding protein, with a motif identified at its N-terminus.
  • p12 contributes to PCNA-dependent pol delta activity, and both p12 and p68 are required for optimal enzyme function.

Conclusions:

  • The p12-PCNA interaction is functional and contributes to DNA replication.
  • Pol delta interacts with PCNA via a divalent mechanism involving both p12 and p68 subunits.
  • p12 may stabilize the overall pol delta-PCNA complex and the pol delta enzyme itself.

Related Concept Videos

The Replisome03:01

The Replisome

DNA replication is carried out by a large complex of proteins that act in a coordinated matter to achieve high-fidelity DNA replication. Together this complex is known as the DNA replication machinery or the replisome.
The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with the...
The Replisome03:01

The Replisome

DNA replication is carried out by a large complex of proteins that act in a coordinated matter to achieve high-fidelity DNA replication. Together this complex is known as the DNA replication machinery or the replisome.
The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with the...
DNA Helicases00:55

DNA Helicases

DNA unwinding helicase enzymes are a type of motor protein. Motor proteins can translocate along filaments or polymers using energy generated from ATP hydrolysis. Helicases are involved in all the important cellular processes where DNA unwinding is required, such as DNA replication, repair, recombination, and transcription. They are present in all living organisms, but vary in their structure, function, and mechanism of action. For example, in prokaryotes, DnaB helicase binds and translocates...
Restarting Stalled Replication Forks02:37

Restarting Stalled Replication Forks

DNA replication is initiated at sites containing predefined DNA sequences known as origins of replication. DNA is unwound at these sites by the minichromosome maintenance (MCM) helicase and other factors such as Cdc45 and the associated GINS complex.The unwound single strands are protected by replication protein A (RPA) until DNA polymerase starts synthesizing DNA at the 5’ end of the strand in the same direction as the replication fork. To prevent the replication fork from falling apart, a...
Replication in Eukaryotes01:29

Replication in Eukaryotes

In eukaryotic cells, DNA replication is highly conserved and tightly regulated. Multiple linear chromosomes must be duplicated with high fidelity before cell division, so there are many proteins that fulfill specialized roles in the replication process. Replication occurs in three phases: initiation, elongation, and termination, and ends with two complete sets of chromosomes in the nucleus.
Many Proteins Orchestrate Replication at the Origin
Eukaryotic replication follows many of the same...
Replication in Eukaryotes02:31

Replication in Eukaryotes

Overview