Related Experiment Video
Updated: Aug 11, 2026

Characterization at the Molecular Level using Robust Biochemical Approaches of a New Kinase Protein
Published on: June 30, 2019
Phosphomevalonate kinase: functional investigation of the recombinant human enzyme
Timothy J Herdendorf1, Henry M Miziorko
1Division of Molecular Biology and Biochemistry, School of Biological Sciences, University of Missouri-Kansas City, Kansas City, Missouri 64110, USA.
Abstract:
Phosphomevalonate kinase (PMK) catalyzes a key step in isoprenoid/sterol biosynthesis, converting mevalonate 5-phosphate and ATP to mevalonate 5-diphosphate and ADP. To expedite functional and structural study of this enzyme, an expression plasmid encoding His-tagged human PMK has been constructed and recombinant enzyme isolated in an active, stable form. PMK catalyzes a reversible reaction; kinetic constants of human PMK have been determined for both forward (formation of mevalonate 5-diphosphate) and reverse (formation of mevalonate 5-phosphate) reactions. Animal and invertebrate PMKs are not orthologous to plant, fungal, or bacterial PMKs, limiting the information available from sequence alignment analysis. A homology model for the structure of human PMK has been generated. The model conforms to a nucleoside monophosphate kinase family fold. This result, together with sequence comparisons of animal and invertebrate PMKs, suggests an N-terminal basic residue rich sequence as a possible "Walker A" ATP binding motif. The functions of four basic (K17, R18, K19, K22) residues and one acidic (D23) residue in the conserved sequence have been tested by mutagenesis and characterization of isolated mutant proteins. Substrate K(m) values for K17M, R18Q, K19M, and D23N have been measured for forward and reverse reactions; in comparison with wild-type PMK values, only modest (<12-fold) changes are observed. In contrast, R18Q exhibits a V(max) decrease of 100/300-fold (forward/reverse reaction). K22M activity is too low for measurement at nonsaturating substrate concentration; specific activity is decreased by >10000-fold in both forward/reverse reactions, suggesting an active site location and an important role in phosphoryl transfer.
Insights
Phosphomevalonate kinase (PMK) is crucial for isoprenoid biosynthesis. Mutagenesis studies identified key residues, particularly K22, essential for human PMK
Area of Science:
- Biochemistry
- Molecular Biology
- Enzymology
Background:
- Phosphomevalonate kinase (PMK) is a vital enzyme in isoprenoid and sterol biosynthesis pathways.
- Understanding human PMK's structure and function is critical for metabolic studies.
Purpose of the Study:
- To produce active, recombinant human PMK for functional and structural analysis.
- To investigate the role of conserved residues in human PMK's catalytic activity and ATP binding.
Main Methods:
- Expression and purification of His-tagged human PMK.
- Determination of kinetic constants for forward and reverse reactions.
- Site-directed mutagenesis to assess the function of key active site residues.
- Homology modeling to predict enzyme structure.
Main Results:
- Recombinant human PMK was successfully produced in an active form.
- Kinetic analysis revealed the reversible nature of PMK catalysis.
- Mutagenesis identified K22 as a critical residue for PMK activity, with mutations causing >10,000-fold decrease in specific activity.
- A homology model suggested a nucleoside monophosphate kinase fold with a potential Walker A motif.
Conclusions:
- Human PMK's structure is conserved within the nucleoside monophosphate kinase family.
- Specific residues, especially K22, play indispensable roles in the catalytic mechanism of human PMK.
- The study provides insights into the structure-function relationship of PMK, aiding further research in isoprenoid biosynthesis.
Related Concept Videos
Protein Kinases and Phosphatases
Protein kinases
Many proteins in the cell are regulated by phosphorylation, the addition of a phosphate group. A family of enzymes called kinases...
Phosphorylation
During phosphorylation, protein kinases transfer the terminal phosphate group of ATP to specific amino acid side chains of substrate proteins. Serine, threonine, and tyrosine are the most commonly...
