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Updated: Jun 27, 2026

Prediction and Validation of Gene Regulatory Elements Activated During Retinoic Acid Induced Embryonic Stem Cell Differentiation
Published on: June 21, 2016
All-trans retinoic acid induces XAF1 expression through an interferon regulatory factor-1 element in colon cancer
Jide Wang1, Ying Peng, Yun Wei Sun
1Institute for Digestive Medicine, Nanfang Hospital, Southern Medical University, Guangzhou, People's Republic of China.
Background & Aims:
X-linked inhibitor of apoptosis protein (XIAP)-associated factor 1 (XAF1) is a novel tumor suppressor and interferon (IFN)-stimulated gene. All-trans retinoic acid (ATRA) exerts an antiproliferative effect on tumor cells through up-regulation of IFN regulatory factor 1 (IRF-1) and the downstream IFN-stimulated genes. The aim of this study was to determine the effect and mechanism of ATRA on XAF1 expression and the role of XAF1 in ATRA-induced growth inhibition in colon cancer.
Methods:
Gene expression is detected by reverse-transcription polymerase chain reaction and immunoblotting. The transcription activity of XAF1 promoter is examined by luciferase reporter assay. The activity of IFN regulatory factor binding element (IRF-E) is assessed by electrophoretic mobility shift assay and chromatin immunoprecipitation assay. Cell growth is evaluated by both in vitro and in vivo in nude mice xenografts.
Results:
IFN-alfa stimulates XAF1 promoter activity in the colon cancer cells Lovo and SW1116 dose-dependently. An IRF-1 binding element (IRF-E-XAF1) is found in the -30 to -38 nucleotide region upstream of the ATG initiator codon of the XAF1 gene. Site-directed mutagenesis of IRF-E-XAF1 abrogates native and IFN-induced promoter activity and binding capacity. ATRA induces XAF1 expression both in vitro and in vivo through interaction with IRF-E-XAF1. Overexpression of XAF1 increases cell susceptibility to ATRA-induced growth suppression both in vitro and in vivo. Furthermore, the effect of ATRA on XAF1 expression is independent of the promoter methylation and the subcellular distribution of XIAP.
Conclusions:
XAF1 participates in ATRA-induced growth suppression through IRF-1-mediated transcriptional regulation.
Insights
All-trans retinoic acid (ATRA) upregulates X-linked inhibitor of apoptosis protein (XIAP)-associated factor 1 (XAF1) via IRF-1. XAF1 mediates ATRA
Area of Science:
- Oncology
- Molecular Biology
- Gene Regulation
Background:
- X-linked inhibitor of apoptosis protein (XIAP)-associated factor 1 (XAF1) is a novel tumor suppressor and interferon (IFN)-stimulated gene.
- All-trans retinoic acid (ATRA) exhibits antiproliferative effects on tumor cells by upregulating IFN regulatory factor 1 (IRF-1) and downstream IFN-stimulated genes.
Purpose of the Study:
- To investigate the effect of ATRA on XAF1 expression and its mechanism.
- To determine the role of XAF1 in ATRA-induced growth inhibition in colon cancer.
Main Methods:
- Gene expression analysis using reverse-transcription polymerase chain reaction and immunoblotting.
- Luciferase reporter assay to assess XAF1 promoter activity.
- Electrophoretic mobility shift assay and chromatin immunoprecipitation to evaluate IRF-1 binding element activity.
- In vitro and in vivo assessment of cell growth in nude mice xenografts.
Main Results:
- IFN-alfa dose-dependently stimulates XAF1 promoter activity in colon cancer cells.
- An IRF-1 binding element (IRF-E-XAF1) located in the promoter region is crucial for XAF1 activity.
- ATRA induces XAF1 expression in vitro and in vivo through interaction with IRF-E-XAF1, enhancing susceptibility to growth suppression.
Conclusions:
- XAF1 plays a role in ATRA-induced growth suppression in colon cancer.
- This effect is mediated by IRF-1-dependent transcriptional regulation of XAF1.
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