Related Experiment Video
Updated: Aug 10, 2026

08:19
Quantitative Comparison of cis-Regulatory Element (CRE) Activities in Transgenic Drosophila melanogaster
Published on: December 19, 2011
Adaptive protein evolution and regulatory divergence in Drosophila
Molecular Biology and Evolution
|March 16, 2006
Summary
Gene expression and protein sequence divergence in Drosophila are not strongly linked by positive selection. Instead, variation in functional constraint likely explains the observed correlation, suggesting regulatory and protein evolution are uncoupled.
Area of Science:
- Evolutionary biology
- Genomics
- Molecular evolution
Background:
- Recent studies in Drosophila suggest a correlation between gene expression divergence and protein sequence divergence.
- This correlation could be attributed to positive selection or varying functional constraints on genes.
Discussion:
- This study investigated molecular evolution patterns for 1,862 genes in Drosophila to differentiate between positive selection and functional constraint as drivers of expression-protein divergence.
- Analysis revealed a non-significant negative trend between positive selection on protein sequences and expression divergence between Drosophila melanogaster and Drosophila simulans.
- Shifts in developmental expression patterns showed a weak, non-significant positive association with adaptive protein evolution.
Key Insights:
- No strong evidence supports an increased incidence of positive selection on protein-coding regions in genes with divergent expression.
- The previously observed positive association between protein and regulatory divergence appears primarily driven by variations in functional constraint rather than positive selection.
Outlook:
- Further research could explore specific mechanisms of functional constraint and their impact on gene expression and protein evolution.
- Investigating other model organisms may reveal conserved or divergent evolutionary pressures on gene regulation and protein sequence.
Related Concept Videos
Exon Recombination
The evolution of new genes is critical for speciation. Exon recombination, also known as exon shuffling or domain shuffling, is an important means of new gene formation. It is observed across vertebrates, invertebrates, and in some plants such as potatoes and sunflowers. During exon recombination, exons from the same or different genes recombine and produce new exon-intron combinations, which might evolve into new genes.
Exon shuffling follows “splice frame rules.” Each exon has three reading...
Exon shuffling follows “splice frame rules.” Each exon has three reading...
Cis-regulatory Sequences
Cis-regulatory sequences are short fragments of non-coding DNA that are present on the same chromosomes as the genes that they regulate. These fragments serve as binding sites for transcriptional regulators, proteins that are responsible for controlling gene transcription and differential gene expression across cell types in eukaryotes. Cis-regulatory sequences can be close to the gene of interest or thousands of bases away in the DNA sequence; however, those sequences that are further away are...
Gene Duplication and Divergence
The seminal work of Ohno in 1970 popularized the idea of gene duplication and divergence. DNA sequence comparison studies reveal that a large portion of the genes in bacteria, archaebacteria, and eukaryotes was generated by gene duplication and divergence, indicating its critical role in evolution.
The duplicated copies of the gene are called Paralogs. Paralogs with similar sequences and functions form a gene family. Across several species, a large number of gene families are characterized.
The duplicated copies of the gene are called Paralogs. Paralogs with similar sequences and functions form a gene family. Across several species, a large number of gene families are characterized.
Conservation of Protein Domains Over Different Proteins
Protein domains are small structurally independent units that are part of a single amino acid chain. Although these domains are often structurally independent, they may rely on synergistic effects to perform their functions as part of a larger protein. Protein domains may be conserved within the same organism, as well as across different organisms.
A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to form...
A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to form...
Gene Evolution - Fast or Slow?
The genomes of eukaryotes are punctuated by long stretches of sequence which do not code for proteins or RNAs. Although some of these regions do contain crucial regulatory sequences, the vast majority of this DNA serves no known function. Typically, these regions of the genome are the ones in which the fastest change, in evolutionary terms, is observed, because there is typically little to no selection pressure acting on these regions to preserve their sequences.
In contrast, regions which code...
In contrast, regions which code...
Evolution of New Traits in Microbes
Microorganisms evolve rapidly due to their large population sizes and short generation times, often exhibiting measurable changes within days under laboratory conditions. Natural selection acts on standing genetic variation, enabling the retention and amplification of beneficial traits that confer fitness advantages in changing environments.Adaptive Pigment Regulation in RhodobacterIn Rhodobacter, a genus of purple non-sulfur bacteria, light-harvesting pigments such as bacteriochlorophyll and...

