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Updated: Aug 10, 2026

Mapping the Structure-Function Relationships of Disordered Oncogenic Transcription Factors Using Transcriptomic Analysis
Published on: June 27, 2020
Cooperative DNA binding with AP-1 proteins is required for transformation by EWS-Ets fusion proteins
Sungeun Kim1, Christopher T Denny, Ron Wisdom
1Division of Hematology/Oncology and UC Davis Cancer Center, University of California at Davis, USA.
Abstract:
A key molecular event in the genesis of Ewing's sarcoma is the consistent presence of chromosomal translocations that result in the formation of proteins in which the amino terminus of EWS is fused to the carboxyl terminus, including the DNA binding domain, of one of five different Ets family proteins. These fusion proteins function as deregulated transcription factors, resulting in aberrant control of gene expression. Recent data indicate that some EWS-Ets target promoters, including the uridine phosphorylase (UPP) promoter, harbor tandem binding sites for Ets and AP-1 proteins. Here we show that those Ets family proteins that participate in Ewing's sarcoma, including Fli1, ERG, and ETV1, cooperatively bind these tandem elements with Fos-Jun while other Ets family members do not. Analysis of this cooperativity in vitro shows that (i) many different spatial arrangements of the Ets and AP-1 sites support cooperative binding, (ii) the bZIP motifs of Fos and Jun are sufficient to support this cooperativity, and (iii) both the Ets domain and carboxy-terminal sequences of Fli1 are important for cooperative DNA binding. EWS-Fli1 activates the expression of UPP mRNA, is directly bound to the UPP promoter, and transforms 3T3 fibroblasts; in contrast, a C-terminally truncated mutant form of EWS-Fli1 that cannot cooperatively bind DNA with Fos-Jun is defective in all of these properties. The results show that the ability of EWS-Ets proteins to cooperatively bind DNA with Fos-Jun is critical to the biologic activities of these proteins. The results have implications for understanding the pathogenesis of Ewing's sarcoma. In addition, they may be relevant to the mechanisms of Ras-dependent activation of genes that harbor tandem Ets and AP-1 binding sites.
Insights
Ewing's sarcoma involves EWS-Ets fusion proteins that deregulate gene expression. Cooperative DNA binding of these proteins with Fos-Jun is critical for their oncogenic activity, impacting Ewing's sarcoma pathogenesis.
Area of Science:
- Molecular biology
- Oncology
- Genetics
Background:
- Ewing's sarcoma arises from chromosomal translocations creating EWS-Ets fusion proteins.
- These fusions act as deregulated transcription factors, altering gene expression.
- Some target genes, like uridine phosphorylase (UPP), have tandem Ets and AP-1 binding sites.
Purpose of the Study:
- To investigate the cooperative DNA binding of EWS-Ets proteins with Fos-Jun.
- To determine the role of this cooperativity in the biological activity of EWS-Fli1.
Main Methods:
- In vitro analysis of cooperative DNA binding between EWS-Ets proteins (Fli1, ERG, ETV1) and Fos-Jun.
- Assessing the impact of EWS-Fli1 binding to the UPP promoter on gene expression and cell transformation.
- Utilizing truncated EWS-Fli1 mutants to study the importance of specific protein domains.
Main Results:
- Ewing's sarcoma-associated Ets proteins (Fli1, ERG, ETV1) cooperatively bind tandem Ets and AP-1 sites with Fos-Jun.
- Cooperative binding is supported by various DNA site arrangements and Fos-Jun's bZIP motifs.
- Both the Ets domain and C-terminal sequences of Fli1 are crucial for cooperative binding.
Conclusions:
- The cooperative DNA binding of EWS-Ets proteins with Fos-Jun is essential for their oncogenic functions, including UPP gene activation and fibroblast transformation.
- This finding is critical for understanding Ewing's sarcoma pathogenesis.
- The mechanism may also apply to Ras-dependent gene activation involving similar promoter elements.
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