Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Videos

An object-oriented programming system for the integration of internet-based bioinformatics resources.

Allan Beveridge1

  • 1Max Planck Institute for Molecular Genetics, Berlin, Germany. allan@dcs.gla.ac.uk

Applied Bioinformatics
|March 17, 2006
PubMed
Summary
This summary is machine-generated.

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

The value of mental science: we publish what matters.

The British journal of psychiatry : the journal of mental science·2025
Same author

TANDEM ZINC-FINGER/PLUS3 integrates light signaling and flowering regulatory pathways at the chromatin level.

The New phytologist·2025
Same author

Optimization of Low-Biomass Sample Collection and Quantitative PCR-Based Titration Impact 16S rRNA Microbiome Resolution.

Microbiology spectrum·2022
Same author

Closing the asylum: the mental patient in modern society - reflection.

The British journal of psychiatry : the journal of mental science·2022
Same author

Characterization of External Mucosal Microbiomes of Nile Tilapia and Grey Mullet Co-cultured in Semi-Intensive Pond Systems.

Frontiers in microbiology·2021
Same author

"A bruised reed shall he not break": John Miles's portraits of patients at the Royal Edinburgh Asylum. Part 2.

The journal of the Royal College of Physicians of Edinburgh·2021

This study introduces a semi-automated system for integrating diverse online data sources, enabling automatic data retrieval from the web. This approach enhances the internet's utility for scientific research by overcoming data integration challenges.

Area of Science:

  • Computer Science
  • Bioinformatics
  • Data Science

Background:

  • The internet is a vast, heterogeneous data repository, posing significant challenges for data integration.
  • Realizing the internet's full potential as a scientific research tool requires effective methods for accessing and integrating diverse data sources.

Purpose of the Study:

  • To present a semi-automated, object-oriented programming system for integrating web-based resources.
  • To demonstrate the feasibility of using existing internet standards for automated data retrieval.

Main Methods:

  • Developed a system that exploits internet standards like HTML, CGI (Common Gateway Interface), and Java.
  • The system scans web interfaces and employs a rule-based approach to generate Java code for automatic data retrieval.

Related Experiment Videos

  • Tested the software's validity on several biological databases.

    • Main Results:

    • Successfully demonstrated a semi-automated system for integrating web-based resources.
    • The developed software can automatically retrieve data from the web by generating Java code.
    • Validated the system's effectiveness using multiple biological databases.

    Conclusions:

    • Current internet standards can be leveraged to build effective data retrieval systems.
    • The developed system offers a viable solution for integrating diverse online data for scientific research.
    • Highlights the need for universal standards to further enhance web-based data accessibility and integration.