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Associated Chromosome Trap for Identifying Long-range DNA Interactions
Published on: April 23, 2011
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Human chromosome 11 DNA sequence and analysis including novel gene identification
Todd D Taylor1, Hideki Noguchi, Yasushi Totoki
1RIKEN Genomic Sciences Center, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan. taylor@gsc.riken.jp
Nature
|March 24, 2006
Summary
Chromosome 11 is gene- and disease-rich, housing over 1,500 protein-coding genes and numerous olfactory receptors. This study provides comprehensive data to understand the genetic basis of 86 unknown disorders linked to this chromosome.
Area of Science:
- Genomics
- Human Genetics
- Molecular Biology
Background:
- Chromosome 11 is gene- and disease-rich, containing a significant portion of human genes and associated disorders.
- Olfactory receptor genes are highly clustered on Chromosome 11, with over 40% of the human genome's total located here.
- A substantial number of disorders (86) linked to Chromosome 11 lack identified molecular genetic underpinnings.
Purpose of the Study:
- To present high-quality genomic data for Chromosome 11.
- To provide a foundation for understanding the genetic basis of diseases linked to Chromosome 11.
- To facilitate research into the 86 disorders with unknown molecular causes on this chromosome.
Main Methods:
- Comprehensive gene annotation of Chromosome 11.
- Analysis of gene density and pseudogene content.
- Mapping of olfactory receptor gene clusters.
- Sequencing and data presentation covering 99.8% of the euchromatic region.
Main Results:
- Chromosome 11 contains 1,524 protein-coding genes and 765 pseudogenes, with an average gene density of 11.6 genes per megabase.
- Over 40% of human olfactory receptor genes are located on Chromosome 11 in 28 distinct clusters.
- Detailed genomic data covering nearly 134.5 million base pairs of the euchromatic sequence is provided.
Conclusions:
- The presented high-quality data for Chromosome 11 serve as a crucial resource for genetic research.
- This resource will aid in identifying the molecular basis of numerous Mendelian traits, cancers, and susceptibility loci.
- Further understanding of Chromosome 11's genetic landscape is essential for advancing human health and disease research.
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