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Polymer translocation through a nanopore under an applied external field.
Kaifu Luo1, Ilkka Huopaniemi, Tapio Ala-Nissila
1Laboratory of Physics, Helsinski University of Technology, P.O. Box 1100, FIN-02015 HUT, Espoo, Finland. luokaifu@yahoo.com
The Journal of Chemical Physics
|March 25, 2006
Summary
Polymer translocation through nanopores shows a crossover in time scaling with chain length, influenced by field strength and pore dimensions. Longer chains experience slower dynamics due to segment density near the pore exit.
Area of Science:
- Soft Matter Physics
- Polymer Physics
- Nanotechnology
Background:
- Polymer translocation through nanopores is crucial for biological processes and nanotechnology applications.
- Understanding the factors influencing translocation dynamics, such as external fields and polymer/pore dimensions, is essential.
Purpose of the Study:
- To investigate the dynamics of polymer translocation through a nanopore under an externally applied field.
- To analyze the influence of field strength (E), chain length (N), and pore length (L) on forced translocation time (tau).
Main Methods:
- Utilized the two-dimensional fluctuating bond model.
- Employed single-segment Monte Carlo moves for simulations.
- Focused on analyzing scaling relationships between translocation time, velocity, and system parameters.
Main Results:
- Discovered a crossover scaling for translocation time (tau) with chain length (N): tau ~ N^(2*nu) for short chains and tau ~ N^(1+nu) for long chains, where nu is the Flory exponent.
- Observed a crossover in translocation velocity (v) from v ~ N^(-nu) to v ~ N^(-1) for longer polymers, attributed to increased segment density near the pore exit.
- Found no clear scaling of tau with N for long pores (Rg || < L), but recovered the asymptotic scaling tau ~ N^(1+nu) for large N, with tau largely independent of L in this regime.
Conclusions:
- The study reveals complex scaling behaviors in polymer translocation dynamics driven by external fields.
- Chain length and pore geometry significantly impact translocation time and velocity, with segment-pore interactions playing a key role.
- The findings provide insights into controlling and optimizing polymer translocation processes in confined geometries.