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Published on: June 15, 2011
Complete sequence data support lack of balancing selection on PRNP in a natural Chinese population
Qin Zan1, Bo Wen1, Yungang He1
1State Key Laboratory of Genetic Engineering and Center for Anthropological Studies, School of Life Sciences and Morgan-Tan International Center for Life Sciences, Fudan University, Shanghai, People's Republic of China.
Abstract:
The M129V mutation in the human prion protein gene (PRNP) is the primary site linked to susceptibility to prion diseases in humans. The heterozygous state of this allele has been proven to be more resistant to prion-related diseases such as Creutzfeldt-Jakob disease. Based on a study of the common genetic variations, it has been proposed that balancing selection has played a critical role in shaping the distribution of 129V in worldwide populations. Kreitman and Di-Rienzo [Kreitman and Di-Rienzo (2004)Trend Genet 20:300-304] challenged this hypothesis by pointing out that the exclusion of polymorphisms with low frequency may introduce an ascertainment bias and, in turn, lead to a wrong conclusion. By studying sequence variations in samples from the Human Genome Diversity Project, Soldevila et al. [Soldevila et al. (2005) Trends Genet 21:389-391] showed that this ascertainment bias does exist. We argue that the evidence presented by Soldevila et al. may be compromised by the samples tested since they were selected from a population that may be substructured. In this study, we re-evaluated the hypothesis of balancing selection in a natural Chinese population using a much longer segment encompassing the entire genomic region of the PRNP gene (15 kb). We showed that the pattern of genetic variation in PRNP is not consistent with the presence of balancing selection in this gene.
Insights
The M129V mutation in the human prion protein gene (PRNP) is linked to prion disease susceptibility. This study found no evidence of balancing selection shaping PRNP genetic variation in a Chinese population.
Area of Science:
- Human Genetics
- Evolutionary Biology
- Neurodegenerative Diseases
Background:
- The M129V polymorphism in the human prion protein gene (PRNP) is associated with prion disease susceptibility.
- Previous studies suggested balancing selection influenced the M129V allele distribution globally.
- Concerns were raised about ascertainment bias in prior analyses of PRNP genetic variation.
Purpose of the Study:
- To re-evaluate the balancing selection hypothesis for PRNP genetic variation.
- To investigate PRNP sequence variations in a natural Chinese population.
Main Methods:
- Analyzed a 15 kb genomic region of the PRNP gene in samples from a Chinese population.
- Examined patterns of genetic variation to assess the role of selection.
- Utilized population genetics approaches to test for deviations from neutral evolution.
Main Results:
- The observed pattern of genetic variation in the PRNP gene in the Chinese population is inconsistent with balancing selection.
- Previous findings suggesting balancing selection may be influenced by ascertainment bias or population substructure.
Conclusions:
- Balancing selection does not appear to be the primary force shaping PRNP genetic variation in this Chinese population.
- Further research is needed to understand the evolutionary forces acting on the PRNP gene and its association with prion diseases.
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