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Updated: Aug 9, 2026

Engineering Antiviral Agents via Surface Plasmon Resonance
Published on: June 14, 2022
The CPSF30 binding site on the NS1A protein of influenza A virus is a potential antiviral target
Karen Y Twu1, Diana L Noah, Ping Rao
1Institute for Cellular and Molecular Biology, Section of Molecular Genetics and Microbiology, University of Texas at Austin, 2500 Speedway, Austin, Texas 78712, USA.
Abstract:
The emergence of influenza A viruses resistant to the two existing classes of antiviral drugs highlights the need for additional antiviral drugs, particularly considering the potential threat of a pandemic of H5N1 influenza A viruses. Here, we determine whether influenza A virus replication can be selectively inhibited by blocking the ability of its NS1A protein to inhibit the 3'-end processing of cellular pre-mRNAs, including beta interferon (IFN-beta) pre-mRNA. Pre-mRNA processing is inhibited via the binding of the NS1A protein to the cellular CPSF30 protein, and mutational inactivation of this NS1A binding site causes severe attenuation of the virus. We demonstrate that binding of CPSF30 is mediated by two of its zinc fingers, F2F3, and that the CPSF30/F2F3 binding site on the NS1A protein extends from amino acid 144 to amino acid 186. We generated MDCK cells that constitutively express epitope-tagged F2F3 in the nucleus, although at only approximately one-eighth the level of the NS1A protein produced during virus infection. Influenza A virus replication was inhibited in this cell line, whereas no inhibition was observed with influenza B virus, whose NS1B protein lacks a binding site for CPSF30. Influenza A virus, but not influenza B virus, induced increased production of IFN-beta mRNA in the F2F3-expressing cells. These results, which indicate that F2F3 inhibits influenza A virus replication by blocking the binding of endogenous CPSF30 to the NS1A protein, point to this NS1A binding site as a potential target for the development of antivirals directed against influenza A virus.
Insights
Blocking influenza A virus NS1A protein binding to CPSF30 inhibits viral replication. This discovery offers a new target for developing antivirals against influenza A, addressing drug resistance and pandemic threats.
Area of Science:
- Virology
- Molecular Biology
- Drug Discovery
Background:
- Influenza A virus resistance to current antivirals necessitates new drug development.
- The NS1A protein of influenza A plays a key role in viral replication by inhibiting host pre-mRNA processing.
- Pandemic threats, such as H5N1 influenza, underscore the urgency for novel antiviral strategies.
Purpose of the Study:
- To investigate if inhibiting the NS1A protein's interaction with CPSF30 can selectively block influenza A virus replication.
- To identify the specific region of CPSF30 involved in binding to the NS1A protein.
Main Methods:
- Generated MDCK cells expressing the F2F3 domain of CPSF30.
- Assessed influenza A and B virus replication in F2F3-expressing cells.
- Measured beta interferon (IFN-beta) mRNA production in response to infection.
Main Results:
- Influenza A virus replication was significantly inhibited in cells expressing F2F3.
- Influenza B virus replication was not affected, as its NS1B protein does not bind CPSF30.
- F2F3 expression led to increased IFN-beta mRNA production during influenza A infection, indicating blocked NS1A function.
Conclusions:
- The binding interaction between influenza A NS1A protein and CPSF30 is crucial for viral replication.
- The F2F3 domain of CPSF30 effectively inhibits influenza A virus replication by disrupting this interaction.
- The NS1A binding site for CPSF30 represents a promising target for developing novel influenza A antivirals.
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