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Updated: Jul 16, 2026

Total Protein Extraction and 2-D Gel Electrophoresis Methods for Burkholderia Species
Published on: October 15, 2013
Differences in the two-dimension-gel electrophoresis protein patterns of the lethal K and benign B variants of
1Department of Pharmacology, University of Nebraska Medical Center, Omaha 68105.
Abstract:
Variants of encephalomyocarditis virus (EMCV) are indistinguishable by hyperimmune serum. In spite of their antigenic similarity, they produce different disease syndromes in susceptible strains of mice. To understand the basis for the diversity in pathogenicity, studies have been initiated to characterize each of the virus variants. In this study, two-dimensional gel electrophoresis was used to compare the proteins produced by the benign EMCV-B with those produced by lethal EMCV-K. The data show that (i) the replication cycle of each of the virus variants is characteristic of picornaviruses, (ii) the VP1 of EMCV-K is more basic than that of EMCV-B, and (iii) three proteins, one a major component of VP1, the other two with molecular weight of about 12,000, are present in EMCV-K but not in EMCV-B.
Insights
Encephalomyocarditis virus (EMCV) variants cause different diseases despite similar antigenicity. Protein analysis revealed distinct viral proteins in the lethal EMCV-K strain compared to the benign EMCV-B strain, offering insights into pathogenicity.
Area of Science:
- Virology
- Molecular Biology
- Pathogenesis research
Background:
- Encephalomyocarditis virus (EMCV) variants exhibit antigenic similarity but cause diverse disease syndromes in mice.
- Understanding the molecular basis for differential pathogenicity among EMCV strains is crucial.
Purpose of the Study:
- To characterize and compare the protein profiles of a benign EMCV variant (EMCV-B) and a lethal EMCV variant (EMCV-K).
- To identify viral protein differences that may explain the distinct pathogenicity of EMCV strains.
Main Methods:
- Two-dimensional gel electrophoresis was employed to compare protein expression between EMCV-B and EMCV-K.
- Analysis focused on identifying differences in viral proteins, including capsid proteins like VP1.
Main Results:
- Both EMCV variants demonstrated replication cycles typical of picornaviruses.
- The viral protein 1 (VP1) of EMCV-K was found to be more basic than that of EMCV-B.
- Three unique proteins, including a major VP1 component and two ~12,000 molecular weight proteins, were detected in EMCV-K but absent in EMCV-B.
Conclusions:
- Distinct protein profiles, particularly variations in VP1 and the presence of specific unique proteins, correlate with the differential pathogenicity of EMCV variants.
- These protein differences are key factors contributing to the varied disease outcomes observed between EMCV-B and EMCV-K infections.
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Western Blotting
The technique begins with separating proteins from the sample using sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), followed by protein transfer, immunoblotting, and finally, protein detection.
Two-dimensional Gel Electrophoresis
The first dimension separation uses the isoelectric focusing or IEF technique performed on immobilized pH gradient (IPG) strips that separate proteins according to their isoelectric points.
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