Determining the structure of phosphorus in phase IV
Takahiro Ishikawa1, Hitose Nagara, Koichi Kusakabe
1Division of Frontier Materials Science, Graduate School of Engineering Science, Osaka University, Toyonaka, Osaka 560-8531, Japan. ishikawa@aquarius.mp.es.osaka-u.ac.jp
Physical Review Letters
|April 12, 2006
Summary
Researchers uncovered the complex structure of phosphorus in phase IV (P-IV phase) using advanced simulations. This study reveals a new modulated monoclinic structure critical for understanding phosphorus under high pressure.
Area of Science:
- Solid-state physics
- Materials science
- Computational chemistry
Background:
- The high-pressure phases of phosphorus are not fully understood.
- Phase IV (P-IV) phosphorus exhibits complex structural behavior.
Purpose of the Study:
- To determine the unknown crystal structure of phosphorus in the P-IV phase.
- To elucidate the role of structural modulation in phase stability.
Main Methods:
- First-principles calculations were employed.
- Metadynamics simulations were utilized to explore structural possibilities.
- Structure refinement was performed by adjusting modulation periods.
Main Results:
- A novel modulated monoclinic structure for P-IV phosphorus was identified.
- Structural modulation was found to be essential for the stability of this phase.
- A refined structure closely matched experimental X-ray powder diffraction data.
Conclusions:
- The determined modulated monoclinic structure is proposed as the P-IV phase of phosphorus.
- The modulation period is likely incommensurate and close to the value found in this study.
Related Concept Videos
Protein Kinases and Phosphatases
Proteins undergo chemical modifications that trigger changes in the charge, structure, and conformation of the proteins. Phosphorylation, acetylation, glycosylation, nitrosylation, ubiquitination, lipidation, methylation, and proteolysis are various protein modifications that regulate protein activity. Such modifications are usually enzyme-driven.
Protein kinases
Many proteins in the cell are regulated by phosphorylation, the addition of a phosphate group. A family of enzymes called kinases...
Protein kinases
Many proteins in the cell are regulated by phosphorylation, the addition of a phosphate group. A family of enzymes called kinases...
Phosphoinositides and PIPs
Phosphoinositides are a group of phospholipids containing a glycerol backbone with two fatty acid chains and a phosphate attached to a myoinositol sugar ring. The inositol head group extends into the cytoplasm, where it is modified by adding phosphate groups to form phosphatidylinositol phosphates or PIPs.
Different phosphoinositides are synthesized and recruited on the cytosolic face of the plasma membrane. The localization of specific phosphoinositides concentrated in separate membrane...
Different phosphoinositides are synthesized and recruited on the cytosolic face of the plasma membrane. The localization of specific phosphoinositides concentrated in separate membrane...
Phosphorylation
The addition or removal of phosphate groups from proteins is the most common chemical modification that regulates cellular processes. These modifications can affect the structure, activity, stability, and localization of proteins within cells as well as their interactions with other proteins.
During phosphorylation, protein kinases transfer the terminal phosphate group of ATP to specific amino acid side chains of substrate proteins. Serine, threonine, and tyrosine are the most commonly...
During phosphorylation, protein kinases transfer the terminal phosphate group of ATP to specific amino acid side chains of substrate proteins. Serine, threonine, and tyrosine are the most commonly...
Photoluminescence: Applications
Photoluminescence offers a wide range of applications due to its inherent sensitivity and selectivity. This technique allows for both direct and indirect analyses of the analyte. Direct quantitative analysis is possible when the analyte exhibits a favorable quantum yield for fluorescence or phosphorescence. However, an indirect analysis may be feasible if the analyte is not fluorescent or phosphorescent, or if the quantum yield is unfavorable. Indirect methods include reacting the analyte with...


