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Updated: Aug 9, 2026

Isolation of Culturable Yeasts and Molds from Soils to Investigate Fungal Population Structure
Published on: May 27, 2022
Low genetic variation and no detectable population structure in aspergillus fumigatus compared to closely related
Carla Rydholm1, George Szakacs, François Lutzoni
1Biology Department, Duke University, Box 90338, Durham, NC 27708, USA. clr@duke.edu
Abstract:
Aspergillus fumigatus is an anamorphic euascomycete mold with a ubiquitous presence worldwide. Despite intensive work to understand its success as a pathogen infecting immunosuppressed patients, the population dynamics and recent evolutionary history of A. fumigatus remain understudied. We examined patterns of genetic variation at three intergenic loci for 70 natural isolates from Europe, North America, South America, Asia, Africa, and Australia. The same loci were used to analyze within-population genetic variation for 33 isolates obtained from five geographic locations. Neither data set detected evidence of population differentiation or found any association between the genetic and geographic distances among these isolates. No evidence for genetic differentiation within the two A. fumigatus mating types was detected. The genetic diversity of A. fumigatus, contrasted with that of its close teleomorphic relatives, Neosartorya fischeri and Neosartorya spinosa, is remarkably low.
Insights
Genetic analysis reveals Aspergillus fumigatus exhibits low genetic diversity globally. This ubiquitous mold shows no population differentiation across continents or mating types, suggesting a recent bottleneck or limited evolutionary history.
Area of Science:
- Microbiology
- Evolutionary Biology
- Mycology
Background:
- Aspergillus fumigatus is a widespread mold and opportunistic pathogen, particularly affecting immunocompromised individuals.
- Despite its clinical significance, the population genetics and evolutionary history of A. fumigatus are not well understood.
- Understanding A. fumigatus population dynamics is crucial for managing its impact as a pathogen.
Purpose of the Study:
- To investigate the population dynamics and recent evolutionary history of Aspergillus fumigatus.
- To analyze patterns of genetic variation across global isolates of A. fumigatus.
- To compare the genetic diversity of A. fumigatus with its teleomorphic relatives, Neosartorya fischeri and Neosartorya spinosa.
Main Methods:
- Analysis of genetic variation at three intergenic loci.
- Sampling of 70 natural A. fumigatus isolates from six continents (Europe, North America, South America, Asia, Africa, Australia).
- Within-population genetic variation analysis of 33 isolates from five geographic locations.
Main Results:
- No evidence of population differentiation was detected among global A. fumigatus isolates.
- No association was found between genetic and geographic distances.
- No genetic differentiation was observed between the two A. fumigatus mating types.
- A. fumigatus demonstrated remarkably low genetic diversity compared to its relatives N. fischeri and N. spinosa.
Conclusions:
- Aspergillus fumigatus exhibits a globally uniform genetic structure with low diversity.
- Geographic location and mating type do not appear to drive genetic differentiation in A. fumigatus.
- The low genetic diversity suggests a recent population expansion, a selective sweep, or a past bottleneck event for A. fumigatus.
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