Related Experiment Video
Updated: Aug 9, 2026

Gastric Mucosa Quantitative Polymerase Chain Reaction Analysis for Detecting Helicobacter pylori and Antibiotic Resistance
Published on: March 7, 2025
Non-Helicobacter bacterial flora rarely develops in the gastric mucosal layer of children
Seiichi Kato1, Shigeru Fujimura, Katsunori Kimura
1Department of Pediatrics, Tohoku University School of Medicine, Seiryo-machi, Sendai, Japan. skato@ped.med.tohoku.ac.jp
Insights
Gastric microbiota in children is rare, unlike in adults. Lower gastric pH and less atrophy in children prevent non-Helicobacter bacterial colonization, regardless of H. pylori infection status.
Area of Science:
- Microbiology
- Pediatric Gastroenterology
Background:
- Non-Helicobacter bacteria colonize adult gastric mucosa, but their presence in children is unstudied.
- Helicobacter pylori infection is linked to altered gastric pH and potential bacterial overgrowth.
Purpose of the Study:
- To investigate the presence and characteristics of gastric biota in children.
- To compare gastric microflora between children and adults, considering H. pylori status and gastric pH.
Main Methods:
- Biopsy specimens and gastric juice from 10 children and 10 adults were analyzed for bacterial presence using culture and real-time PCR.
- Bacterial identification utilized 52 genus- and species-specific primer sets.
- Data were compared between age groups, H. pylori status, and luminal pH.
Main Results:
- Non-Helicobacter bacteria were cultured from all adults but only one child (p < .001).
- Children had significantly lower gastric pH (median 1.4) than adults (median 2.6) (p < .005).
- Adult gastric pH correlated positively with bacterial counts; gastric atrophy was more severe in adults.
Conclusions:
- Non-Helicobacter bacteria rarely colonize the gastric mucosa in children, irrespective of H. pylori status.
- Lower gastric pH and reduced gastric atrophy in children appear to inhibit bacterial colonization.
- Impaired gastric acid secretion in adults with H. pylori facilitates non-Helicobacter bacterial colonization.
Abstract:
Non-Helicobacter bacteria can be cultured from the gastric mucosa in adults but in children, there are no studies about such microflora. The purpose of this study, therefore, was to clarify whether gastric biota develops in children. In 10 children and 10 adults or elderly (5 H. pylori-infected and 5 uninfected in each group), biopsy specimens of the gastric antrum and corpus and gastric juice were studied for bacterial examinations and the data were compared between both age groups in relation to H. pylori status and luminal pH. Bacterial genera and species were analyzed using both culture and real-time polymerase chain reaction (PCR) with the 52 genus- and species-specific primer sets. Non-Helicobacter bacteria in the mucosa were cultured from all adult patients, whereas microorganisms were cultured in only one child (p < .001). Gastric pH was lower in children (median, 1.4) than in adults (median, 2.6) (p < .005). The grade of endoscopic gastric atrophy was moderate or severe in 8 adults, but absent or mild in all 10 children. Among adults, there was a significant positive correlation between gastric pH and total bacterial counts of both the mucosa and juice. These data indicate that impaired gastric acid secretion associated with long-term H. pylori infection enables non-Helicobacter bacteria to colonize in the human stomach. Such microorganisms rarely colonize in the gastric mucosa in children regardless of H. pylori status.
Related Concept Videos
Microbiota of the Stomach and Small Intestine
Gastritis II: Pathophysiology
Peptic Ulcer
Mucosal Barrier of the Stomach
Within parietal cells, carbonic acid is first formed through the reaction of water and carbon dioxide. The dissociation of carbonic acid releases bicarbonate and hydrogen ions. The bicarbonate...
Development of Human Microbiota
Treating Helicobacter pylori in Peptic Ulcers: Antimicrobial Therapy

