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Updated: Aug 9, 2026

Deciphering the Structural Effects of Activating EGFR Somatic Mutations with Molecular Dynamics Simulation
Published on: May 20, 2020
In-frame deletion in the EGF receptor alters kinase inhibition by gefitinib
Kazuko Sakai1, Hideyuki Yokote, Kimiko Murakami-Murofushi
1Shien-Lab, National Cancer Center Research Institute, Tsukiji 5-1-1, Chuo-ku, Tokyo 104-0045, Japan.
Abstract:
The existence of an in-frame deletion mutant correlates with the sensitivity of lung cancers to EGFR (epidermal growth factor receptor)-targeted tyrosine kinase inhibitors. We reported previously that the in-frame 15-bp deletional mutation (delE746-A750 type deletion) was constitutively active in cells. Kinetic parameters are important for characterizing an enzyme; however, it remains unclear whether the kinetic parameters of deletion mutant EGFR are similar to those of wild-type EGFR. We analysed autophosphorylation in response to ATP and inhibition of gefitinib for deletion mutant EGFR and wild-type EGFR. Kinetic studies, examining autophosphorylation, were carried out using EGFR fractions extracted from 293-pDelta15 and 293-pEGFR cells transfected with deletion mutant EGFR and wild-type EGFR respectively. We demonstrated the difference in activities between unstimulated wild-type (K(m) for ATP=4.0+/-0.3 microM) and mutant EGFR (K(m) for ATP=2.5+/-0.2 microM). There was no difference in K(m) values between EGF-stimulated wild-type EGFR (K(m) for ATP=1.9+/-0.1 microM) and deletion mutant EGFR (K(m) for ATP=2.2+/-0.2 microM). These results suggest that mutant EGFR is active without ligand stimulation. The K(i) value for gefitinib of the deletion mutant EGFR was much lower than that of wild-type EGFR. These results suggest that the deletion mutant EGFR has a higher affinity for gefitinib than wild-type EGFR.
Insights
A specific deletion in epidermal growth factor receptor (EGFR) makes lung cancer cells constitutively active. This mutant EGFR exhibits altered kinetics and higher affinity for gefitinib, impacting targeted therapy effectiveness.
Area of Science:
- Oncology
- Molecular Biology
- Biochemistry
Background:
- In-frame deletions in EGFR correlate with lung cancer sensitivity to tyrosine kinase inhibitors.
- The delE746-A750 deletion mutation in EGFR leads to constitutive activity in cells.
Purpose of the Study:
- To compare the kinetic parameters of deletion mutant EGFR with wild-type EGFR.
- To investigate the autophosphorylation activity and gefitinib inhibition of both mutant and wild-type EGFR.
Main Methods:
- Kinetic studies of autophosphorylation using EGFR fractions from transfected cell lines (293-pDelta15 and 293-pEGFR).
- Analysis of enzyme kinetics in response to ATP and gefitinib inhibition.
Main Results:
- Unstimulated mutant EGFR showed a lower K(m) for ATP (2.5+/-0.2 microM) compared to wild-type EGFR (4.0+/-0.3 microM).
- EGF-stimulated EGFR (both wild-type and mutant) exhibited similar K(m) values for ATP.
- Deletion mutant EGFR displayed a significantly lower K(i) for gefitinib, indicating higher affinity.
Conclusions:
- Mutant EGFR is constitutively active, independent of ligand stimulation.
- The deletion mutant EGFR has a higher affinity for gefitinib than wild-type EGFR, explaining differential drug sensitivity.
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