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Updated: Aug 8, 2026

DamID-seq: Genome-wide Mapping of Protein-DNA Interactions by High Throughput Sequencing of Adenine-methylated DNA Fragments
Published on: January 27, 2016
dDYRK2 and Minibrain interact with the chromatin remodelling factors SNR1 and TRX
Ross Kinstrie1, Pamela A Lochhead, Gary Sibbet
1The Beatson Institute for Cancer Research, Garscube Estate, Switchback Road, Bearsden, Glasgow G61 1BD, Scotland, UK.
Abstract:
The DYRKs (dual specificity tyrosine phosphorylation-regulated kinases) are a conserved family of protein kinases that autophosphorylate a tyrosine residue in their activation loop by an intra-molecular mechanism and phosphorylate exogenous substrates on serine/threonine residues. Little is known about the identity of true substrates for DYRK family members and their binding partners. To address this question, we used full-length dDYRK2 (Drosophila DYRK2) as bait in a yeast two-hybrid screen of a Drosophila embryo cDNA library. Of 14 independent dDYRK2 interacting clones identified, three were derived from the chromatin remodelling factor, SNR1 (Snf5-related 1), and three from the essential chromatin component, TRX (trithorax). The association of dDYRK2 with SNR1 and TRX was confirmed by co-immunoprecipitation studies. Deletion analysis showed that the C-terminus of dDYRK2 modulated the interaction with SNR1 and TRX. DYRK family member MNB (Minibrain) was also found to co-precipitate with SNR1 and TRX, associations that did not require the C-terminus of the molecule. dDYRK2 and MNB were also found to phosphorylate SNR1 at Thr102 in vitro and in vivo. This phosphorylation required the highly conserved DH-box (DYRK homology box) of dDYRK2, whereas the DH-box was not essential for phosphorylation by MNB. This is the first instance of phosphorylation of SNR1 or any of its homologues and implicates the DYRK family of kinases with a role in chromatin remodelling.
Insights
Dual specificity tyrosine phosphorylation-regulated kinases (DYRKs) interact with chromatin remodelers SNR1 and TRX. This study reveals DYRKs phosphorylate SNR1, linking these kinases to chromatin remodeling processes.
Area of Science:
- Molecular Biology
- Biochemistry
- Genetics
Background:
- Dual specificity tyrosine phosphorylation-regulated kinases (DYRKs) are conserved protein kinases.
- Their substrates and binding partners remain largely uncharacterized.
- DYRKs autophosphorylate tyrosine residues and phosphorylate substrates on serine/threonine.
Purpose of the Study:
- To identify substrates and binding partners of Drosophila DYRK2 (dDYRK2).
- To investigate the role of DYRK family kinases in chromatin remodeling.
Main Methods:
- Yeast two-hybrid screening using full-length dDYRK2.
- Co-immunoprecipitation assays to confirm protein interactions.
- In vitro and in vivo phosphorylation assays.
Main Results:
- dDYRK2 interacts with the chromatin remodeling factor SNR1 and the chromatin component TRX.
- DYRK family member MNB also associates with SNR1 and TRX.
- dDYRK2 and MNB phosphorylate SNR1 at Thr102, a novel post-translational modification.
Conclusions:
- This study identifies SNR1 and TRX as novel interacting partners of dDYRK2 and MNB.
- The phosphorylation of SNR1 by DYRK kinases suggests a role for this kinase family in chromatin remodeling.
- This work provides the first evidence of SNR1 phosphorylation and implicates DYRKs in chromatin-related functions.
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