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Updated: Aug 8, 2026

Epithelial Cell Infection Analyses with Shigella
Published on: February 9, 2024
Epidemiology and genetic characterization of Shigella flexneri strains isolated from three paediatric populations in
S F Ahmed1, M S Riddle, T F Wierzba
1United States Naval Medical Research Unit - 3, Cairo, Egypt.
Insights
Shigella flexneri serotype 1c is emerging in Egypt, with high resistance to common antibiotics like ampicillin and tetracycline. This finding is crucial for developing effective Shigella vaccines.
Area of Science:
- Microbiology
- Infectious Diseases
- Public Health
Background:
- Shigella flexneri is a leading cause of bacterial dysentery worldwide.
- Understanding regional serotype prevalence and antimicrobial resistance is vital for disease control.
Purpose of the Study:
- To characterize Shigella flexneri isolates from Egyptian children.
- To determine serotype distribution and antimicrobial resistance patterns.
- To inform Shigella vaccine development strategies.
Main Methods:
- Isolation and serotyping of Shigella flexneri from 97 children in Egypt.
- Antimicrobial susceptibility testing.
- Pulsed-field gel electrophoresis (PFGE) for genetic relatedness.
- Detection of specific virulence genes (set and sen).
Main Results:
- Serotypes 2a, 1b, 1c, and 6 accounted for over 88.7% of isolates.
- Shigella flexneri serotype 1c showed increased prevalence.
- High resistance rates observed for ampicillin (87.6%), tetracycline (84.5%), and trimethoprim-sulfamethoxazole (63.9%).
- PFGE demonstrated distinct clustering by serotype.
- The sen gene was universally present; the set gene was specific to serogroup 2a.
Conclusions:
- Shigella flexneri serotype 1c has emerged as a dominant serotype in Egypt.
- High antimicrobial resistance necessitates careful treatment choices.
- Future Shigella vaccine development must account for regional serotype diversity.
Abstract:
Ninety-seven isolates of Shigella flexneri from children seeking medical care from three sites in Egypt were characterized. Overall, 46.4% of children (median age 17 months) were febrile or reported blood in their stools, 25.8% were dehydrated and 16.5% were admitted to hospital. Serotypes 2a (37.1%), 1b (18.6%), 1c (17.5%), and 6 (15.5%) comprised over 88.7% of the total isolates. We observed marked resistance to ampicillin (87.6%), tetracycline (84.5%) and trimethoprim-sulfamethoxazole (63.9%). Pulsed-field electrophoresis grouped the majority of isolates within a serotype together, separately from isolates of an alternative serotype. The set gene was present in all serogroup 2a isolates, however, the sen gene was detected in every isolate. Our results show S. flexneri 1c has emerged as a dominant S. flexneri serotype in Egypt. Development and application of a Shigella vaccine should consider the diversity of Shigella serotypes within a geographical region prior to administration.
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