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Evidence for a methylation-blocking factor (mbf) locus involved in pap pilus expression and phase variation in
B A Braaten1, L B Blyn, B S Skinner
1Department of Pathology, University of Utah Medical Center, Salt Lake City 84132.
Abstract:
Transcription of the pyelonephritis-associated pilus (pap) operon of Escherichia coli is subject to regulation by a phase variation control mechanism in which the pap pilin gene alternates between transcriptionally active (phase-on) and inactive (phase-off) states. Pap phase variation appears to involve differential inhibition of deoxyadenosine methylase (Dam) methylation of two pap GATC sites, GATC1028 and GATC1130, located in the regulatory region upstream of the papBA promoter. DNA from phase-on cells contains an unmethylated adenosine in the GATC1028 site, whereas DNA from phase-off cells contains an unmethylated adenosine in the GATC1130 site. papI and papB are two regulatory genes in the pap operon. Analysis of pap deletion mutants suggests that papI is required for methylation inhibition at the GATC1028 site; however, neither papI nor papB is required for inhibition of methylation at the GATC1130 site. We have identified a chromosomal locus, mbf (methylation-blocking factor), that is required for methylation protection of both the pap GATC1028 and GATC1130 sites. The mbf locus was identified after transposon mTn10 mutagenesis and mapped to 19.6 min on the E. coli chromosome. The effect of transposon mutations within mbf on pap pilin transcription was determined by using a papBAp-lac operon fusion which places lacZ under control of the papBA promoter. E. coli containing mbf::mTn10 and phase-off mbf+ E. coli cells both expressed beta-galactosidase levels about 30-fold lower than the beta-galactosidase level measured for phase-on mbf+ E. coli cells. These results indicated that mbf was necessary for pap pilin transcription and were supported by Northern (RNA) blotting and primer extension analyses. Moreover, transposon insertion within mbf greatly reduced Pap pilus expression. The mbf locus was isolated on a low-copy-number cosmid, pMBF1. Complementation analysis indicated that each of seven mbf::mTn10 mutants isolated contained a transposon insertion within the same gene or operon. The identification of the mbf locus, required for pap transcription, supports the hypothesis that pap phase variation is controlled by a mechanism involving alternation between different methylation states.
Insights
A novel methylation-blocking factor (mbf) controls pyelonephritis-associated pilus (pap) operon transcription in Escherichia coli. This mbf locus is essential for pap pilin gene expression and pilus formation, regulating phase variation.
Area of Science:
- Microbiology
- Molecular Biology
- Genetics
Background:
- Escherichia coli utilizes phase variation to regulate pyelonephritis-associated pilus (pap) operon transcription, alternating between active (phase-on) and inactive (phase-off) states.
- This regulation involves differential methylation of GATC sites within the pap operon's regulatory region, specifically GATC1028 and GATC1130.
Purpose of the Study:
- To identify the genetic factors responsible for regulating pap operon methylation states and controlling phase variation.
- To elucidate the mechanism by which methylation influences pap pilin gene transcription and pilus expression.
Main Methods:
- Transposon mutagenesis using mTn10 to identify mutations affecting pap operon regulation.
- Construction of papBAp-lac operon fusions to quantify pap pilin gene transcription via beta-galactosidase activity.
- Northern blotting and primer extension analyses to confirm transcriptional changes.
- Isolation and complementation analysis of the identified locus using cosmid cloning.
Main Results:
- A new chromosomal locus, mbf (methylation-blocking factor), was identified as essential for protecting both GATC1028 and GATC1130 sites from methylation.
- Mutations in mbf led to a significant decrease (approximately 30-fold) in pap pilin gene transcription and Pap pilus expression, similar to the phase-off state.
- Complementation analysis confirmed that all seven isolated mbf mutants contained insertions within the same gene or operon.
Conclusions:
- The mbf locus is a critical regulator of pap operon transcription and is necessary for maintaining the phase-on state.
- The findings support a model where pap phase variation is controlled by alternating DNA methylation states, mediated by the mbf locus.
- mbf plays a crucial role in pilus expression, impacting bacterial virulence mechanisms.
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