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Mapping the Structure-Function Relationships of Disordered Oncogenic Transcription Factors Using Transcriptomic Analysis
Published on: June 27, 2020
DEK Expression is controlled by E2F and deregulated in diverse tumor types
Maria Stella Carro1, Fabio Mario Spiga, Micaela Quarto
1The FIRC Institute of Molecular Oncology Foundation, Department of Experimental Oncology, European Institute of Oncology, Milan, Italy.
Abstract:
Deregulation of the retinoblastoma (pRB) tumor suppressor pathway associated with aberrant activity of E2F transcription factors is frequently observed in human cancer. Microarray based analyses have revealed a large number of potential downstream mediators of the tumor suppressing activity of pRB, including DEK, a fusion partner of CAN found in a subset of acute myeloid leukaemia (AML) patients carrying a (6; 9) translocation. Here we report that the expression of DEK is under direct control of E2F transcription factors. Chromatin immunoprecipitation assays show that the DEK promoter is bound by endogenous E2F in vivo. The DEK promoter is transactivated by E2F and mutation of E2F binding sites eliminates this effect. Expression levels of DEK in human tumors have been investigated by tissue micro array analysis. We find that DEK is overexpressed in many solid tumors such as colon cancer, larynx cancer, bladder cancer, and melanoma.
Insights
The retinoblastoma pathway is often deregulated in cancer. This study found that the DEK gene, implicated in certain leukemias, is directly controlled by E2F transcription factors and overexpressed in various solid tumors.
Area of Science:
- Oncology
- Molecular Biology
- Cancer Genetics
Background:
- Deregulation of the retinoblastoma (pRB) tumor suppressor pathway and aberrant E2F transcription factor activity are common in human cancers.
- Microarray analyses identified numerous potential downstream mediators of pRB tumor suppression, including the DEK gene.
- DEK is a fusion partner of CAN in acute myeloid leukemia (AML) with a (6; 9) translocation.
Purpose of the Study:
- To investigate the regulatory relationship between E2F transcription factors and the DEK gene.
- To determine if DEK expression is directly controlled by E2F.
- To analyze DEK expression levels in various human solid tumors.
Main Methods:
- Chromatin immunoprecipitation (ChIP) assays to detect E2F binding to the DEK promoter in vivo.
- Reporter assays to assess E2F-mediated transactivation of the DEK promoter.
- Site-directed mutagenesis to identify functional E2F binding sites.
- Tissue microarray analysis to quantify DEK expression in human tumors.
Main Results:
- Endogenous E2F directly binds to the DEK promoter in vivo.
- E2F transactivates the DEK promoter.
- Mutation of E2F binding sites abolishes DEK promoter transactivation.
- DEK is overexpressed in a significant proportion of investigated solid tumors, including colon cancer, larynx cancer, bladder cancer, and melanoma.
Conclusions:
- DEK expression is directly regulated by E2F transcription factors.
- The DEK gene is a novel downstream target of the E2F pathway.
- Overexpression of DEK in various solid tumors suggests its potential role in tumorigenesis and warrants further investigation.
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