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Analysis of Endocytic Uptake and Retrograde Transport to the Trans-Golgi Network Using Functionalized Nanobodies in Cultured Cells
Published on: February 21, 2019
The human Vps29 retromer component is a metallo-phosphoesterase for a cation-independent mannose 6-phosphate receptor
Ester Damen1, Elmar Krieger, Jens E Nielsen
1Department of Cell Biology, Faculty of Sciences, Radboud University Nijmegen, Toernooiveld 1, 6525 ED Nijmegen, The Netherlands.
Abstract:
The retromer complex is involved in the retrograde transport of the CI-M6PR (cation-independent mannose 6-phosphate receptor) from endosomes to the Golgi. It is a hetero-trimeric complex composed of Vps26 (vacuolar sorting protein 26), Vps29 and Vps35 proteins, which are conserved in eukaryote evolution. Recently, elucidation of the crystal structure of Vps29 revealed that Vps29 contains a metallo-phosphoesterase fold [Wang, Guo, Liang, Fan, Zhu, Zang, Zhu, Li, Teng, Niu et al. (2005) J. Biol. Chem. 280, 22962-22967; Collins, Skinner, Watson, Seaman and Owen (2005) Nat. Struct. Mol. Biol. 12, 594-602]. We demonstrate that recombinant hVps29 (human Vps29) displays in vitro phosphatase activity towards a serine-phosphorylated peptide, containing the acidic-cluster dileucine motif of the cytoplasmatic tail of the CI-M6PR. Efficient dephosphorylation required the additional presence of recombinant hVps26 and hVps35 proteins, which interact with hVps29. Phosphatase activity of hVps29 was greatly decreased by alanine substitutions of active-site residues that are predicted to co-ordinate metal ions. Using inductively coupled plasma MS, we demonstrate that recombinant hVps29 binds zinc. Moreover, hVps29-dependent phosphatase activity is greatly reduced by non-specific and zinc-specific metal ion chelators, which can be completely restored by addition of excess ZnCl2. The binuclear Zn2+ centre and phosphate group were modelled into the hVps29 catalytic site and pKa calculations provided further insight into the molecular mechanisms of Vps29 phosphatase activity. We conclude that the retromer complex displays Vps29-dependent in vitro phosphatase activity towards a serinephosphorylated acidic-cluster dileucine motif that is involved in endosomal trafficking of the CI-M6PR. The potential significance of these findings with respect to regulation of transport of cycling trans-Golgi network proteins is discussed.
Insights
The retromer complex, containing Vps29, Vps26, and Vps35, dephosphorylates proteins involved in endosomal transport. This Vps29-dependent phosphatase activity is crucial for the cation-independent mannose 6-phosphate receptor
Area of Science:
- Cell Biology
- Molecular Biology
- Biochemistry
Background:
- The retromer complex mediates retrograde transport from endosomes to the Golgi.
- It is a heterotrimer of Vps26, Vps29, and Vps35 proteins.
- Vps29 possesses a metallo-phosphoesterase fold.
Purpose of the Study:
- To investigate the enzymatic activity of the retromer complex, specifically Vps29.
- To determine the role of Vps29 in the dephosphorylation of the cation-independent mannose 6-phosphate receptor (CI-M6PR).
Main Methods:
- Recombinant human Vps29, Vps26, and Vps35 were expressed and purified.
- In vitro phosphatase activity assays were performed using a serine-phosphorylated peptide from CI-M6PR.
- Inductively coupled plasma mass spectrometry (ICP-MS) was used to detect metal ion binding.
- Site-directed mutagenesis and metal ion chelation studies were conducted.
Main Results:
- Recombinant human Vps29 exhibited in vitro phosphatase activity on a CI-M6PR peptide.
- This activity required the presence of Vps26 and Vps35.
- Vps29 was found to bind zinc, and its phosphatase activity was dependent on Zn2+ ions.
- Mutations in predicted active-site residues reduced phosphatase activity.
Conclusions:
- The retromer complex possesses Vps29-dependent phosphatase activity.
- This activity targets a serine-phosphorylated motif on the CI-M6PR.
- The findings suggest a role for Vps29's phosphatase activity in regulating endosomal trafficking of CI-M6PR and other cycling proteins.
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