The human Vps29 retromer component is a metallo-phosphoesterase for a cation-independent mannose 6-phosphate receptor

Ester Damen1, Elmar Krieger, Jens E Nielsen

  • 1Department of Cell Biology, Faculty of Sciences, Radboud University Nijmegen, Toernooiveld 1, 6525 ED Nijmegen, The Netherlands.

Insights

The retromer complex, containing Vps29, Vps26, and Vps35, dephosphorylates proteins involved in endosomal transport. This Vps29-dependent phosphatase activity is crucial for the cation-independent mannose 6-phosphate receptor

Area of Science:

  • Cell Biology
  • Molecular Biology
  • Biochemistry

Background:

  • The retromer complex mediates retrograde transport from endosomes to the Golgi.
  • It is a heterotrimer of Vps26, Vps29, and Vps35 proteins.
  • Vps29 possesses a metallo-phosphoesterase fold.

Purpose of the Study:

  • To investigate the enzymatic activity of the retromer complex, specifically Vps29.
  • To determine the role of Vps29 in the dephosphorylation of the cation-independent mannose 6-phosphate receptor (CI-M6PR).

Main Methods:

  • Recombinant human Vps29, Vps26, and Vps35 were expressed and purified.
  • In vitro phosphatase activity assays were performed using a serine-phosphorylated peptide from CI-M6PR.
  • Inductively coupled plasma mass spectrometry (ICP-MS) was used to detect metal ion binding.
  • Site-directed mutagenesis and metal ion chelation studies were conducted.

Main Results:

  • Recombinant human Vps29 exhibited in vitro phosphatase activity on a CI-M6PR peptide.
  • This activity required the presence of Vps26 and Vps35.
  • Vps29 was found to bind zinc, and its phosphatase activity was dependent on Zn2+ ions.
  • Mutations in predicted active-site residues reduced phosphatase activity.

Conclusions:

  • The retromer complex possesses Vps29-dependent phosphatase activity.
  • This activity targets a serine-phosphorylated motif on the CI-M6PR.
  • The findings suggest a role for Vps29's phosphatase activity in regulating endosomal trafficking of CI-M6PR and other cycling proteins.

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