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Related Experiment Videos

CMD: a Cotton Microsatellite Database resource for Gossypium genomics.

Anna Blenda1, Jodi Scheffler, Brian Scheffler

  • 1Department of Genetics and Biochemistry, Clemson University, Biosystems Research Center, 51 New Cherry Street, Clemson, SC 29634, USA. blenda@clemson.edu

BMC Genomics
|June 2, 2006
PubMed
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The Cotton Microsatellite Database (CMD) offers centralized access to over 5,000 cotton microsatellites, aiding cotton breeding research. This resource accelerates genetic mapping and molecular breeding in Gossypium species.

Area of Science:

  • Plant genetics
  • Bioinformatics
  • Agricultural science

Background:

  • The Cotton Microsatellite Database (CMD) provides centralized access to publicly available cotton microsatellites.
  • Microsatellites are crucial for research in cotton breeding.

Purpose of the Study:

  • To create a curated, integrated, web-based relational database for cotton microsatellites.
  • To facilitate efficient utilization of microsatellite resources for cotton research.

Main Methods:

  • CMD integrates publication, sequence, primer, mapping, and homology data from nine major microsatellite projects.
  • Includes data for 5,484 microsatellites and screening against a diverse germplasm panel.
  • Provides online tools: SSR server, BLAST/FASTA servers, CAP3 server, and CMap viewer.

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Main Results:

  • CMD contains data for 5,484 cotton microsatellites.
  • Offers a standardized panel of 12 diverse genotypes for data screening.
  • Features a suite of data mining and analysis tools.

Conclusions:

  • Centralized database enhances microsatellite resource utilization.
  • Accelerates basic and applied research in molecular breeding and genetic mapping.
  • Supports research in Gossypium species.