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Sequencing Small Non-coding RNA from Formalin-fixed Tissues and Serum-derived Exosomes from Castration-resistant Prostate Cancer Patients
Published on: November 18, 2019
Identification of genes targeted by the androgen and PKA signaling pathways in prostate cancer cells
G Wang1, S J M Jones, M A Marra
1Genome Sciences Centre, BC Cancer Agency, Vancouver, British Columbia, Canada.
Abstract:
Progression of prostate cancer to androgen independence is suspected to involve the androgen and protein kinase A (PKA) signaling pathways. Here for the first time, the transcriptomes associated with each pathway and common transcriptional targets in response to stimulation of both pathways were identified in human prostate cancer cells using Affymetrix GeneChip technology (Human Genome U133 plus2). Statistically significant changes in the levels of 858 genes in response to androgen and 303 genes in response to activation of the PKA pathway were determined using GeneSpring software. Expression of a subset of these genes (22) that were transcriptional targets for the androgen and/or PKA pathways were validated by reverse transcriptase-polymerase chain reaction and Western blot analyses. Application of small interfering RNAs to the androgen receptor (AR) revealed that in addition to KLK3, levels of expression of KLK2 and SESN1 were regulated by AR activated by both the androgen and PKA signaling pathways. SESN1 was identified as a gene repressed by activated AR. These results provide a broad view of the effects of the androgen and PKA signaling pathways on the transcriptional program of prostate cancer cells and indicate that only a limited number of genes are targeted by cross-talk between AR and PKA pathways.
Insights
This study reveals how androgen and protein kinase A (PKA) pathways affect prostate cancer cell transcription. Limited gene cross-talk was observed between androgen receptor (AR) and PKA signaling pathways.
Area of Science:
- Molecular Biology
- Cancer Research
- Genomics
Background:
- Prostate cancer progression to androgen independence is linked to androgen and protein kinase A (PKA) signaling.
- Understanding the transcriptional changes in these pathways is crucial for cancer treatment.
Purpose of the Study:
- To identify transcriptomes associated with androgen and PKA pathways in prostate cancer cells.
- To discover common transcriptional targets regulated by both pathways.
- To investigate the cross-talk between androgen receptor (AR) and PKA signaling.
Main Methods:
- Utilized Affymetrix GeneChip technology (Human Genome U133 plus2) to analyze transcriptomes.
- Employed GeneSpring software for statistical analysis of gene expression changes.
- Validated gene expression using reverse transcriptase-polymerase chain reaction and Western blot analyses.
- Used small interfering RNAs (siRNAs) to investigate androgen receptor (AR) regulation.
Main Results:
- Identified 858 genes affected by androgen signaling and 303 genes by PKA pathway activation.
- Validated 22 genes as transcriptional targets of androgen and/or PKA pathways.
- Found that AR, activated by both androgen and PKA, regulates KLK3, KLK2, and SESN1 expression.
- Determined that SESN1 is repressed by activated AR.
Conclusions:
- Provided a comprehensive view of androgen and PKA pathway effects on prostate cancer cell transcription.
- Demonstrated limited cross-talk between AR and PKA signaling pathways, targeting a small number of genes.
- Highlighted the regulatory role of AR in genes like KLK2 and SESN1 in response to combined signaling.
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