Molecular mimicry revisited: gut bacteria and multiple sclerosis
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Updated: Aug 8, 2026

Microbiota Analysis Using Two-step PCR and Next-generation 16S rRNA Gene Sequencing
Published on: October 15, 2019
1Institute for Disease Research, P.O. Box 890193, Temecula, CA 92589, USA. fcwestallidr@adelphia.net
Abstract:
Molecular mimicry is a possible explanation for autoimmune side effects of microorganism infections. Protein sequences from a particular microorganism are compared to known autoimmune immunogens. For diseases such as multiple sclerosis (MS), where the infectious agent is unknown, guesses to its identity are made. Mimics are assumed to be rare. This study takes a radically different approach. Reported sequences from all known human bacterial and viral agents were searched for autoimmune immunogen mimics. Three encephalitogenic peptides, whose autoimmune requirements have been studied extensively, were selected for comparison. Mimics were seen in a wide variety of organisms. For each immunogen, the mimics were found predominantly in nonpathogenic gut bacteria. Since the three immunogens used in this study are related to MS, it is suggested that a microorganism responsible for autoimmune activity in MS could be a normally occurring gut bacterium. This would explain many of the peculiar MS epidemiological data and why no infective agent has been identified for MS and supports recently found MS gut metabolism abnormalities.
Insights
Molecular mimicry may explain autoimmune diseases like multiple sclerosis (MS). Researchers found mimics in gut bacteria, suggesting common bacteria, not rare pathogens, could trigger MS and related gut issues.
Area of Science:
- Immunology
- Microbiology
- Neurology
Background:
- Molecular mimicry is a proposed mechanism for autoimmune diseases triggered by microbial infections.
- Identifying the specific infectious agent is challenging, especially for diseases like multiple sclerosis (MS).
- Existing research often assumes autoimmune mimics are rare.
Purpose of the Study:
- To systematically search for autoimmune immunogen mimics across a broad range of human bacterial and viral agents.
- To investigate the prevalence and origin of mimics for specific encephalitogenic peptides related to MS.
- To explore the potential role of common gut bacteria in MS pathogenesis.
Main Methods:
- Compared protein sequences of known autoimmune immunogens against databases of human bacterial and viral sequences.
- Focused analysis on three well-studied encephalitogenic peptides associated with MS.
- Identified and characterized mimic sequences found in various microorganisms.
Main Results:
- Autoimmune immunogen mimics were identified in a wide array of microorganisms, challenging the assumption of rarity.
- Mimics for the selected MS-related immunogens were predominantly found in nonpathogenic gut bacteria.
- The distribution of mimics suggests a potential link between gut microbiota and MS.
Conclusions:
- The study suggests that normally occurring gut bacteria, rather than rare pathogens, may be responsible for autoimmune activity in MS.
- This finding could explain the complex epidemiology of MS and the lack of a definitive infectious agent.
- The results support recent observations of gut metabolism abnormalities in MS patients.
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