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Immunostaining for DNA Modifications: Computational Analysis of Confocal Images
Published on: September 7, 2017
DNA methylation as a marker for the past and future
Toshikazu Ushijima1, Takeshi Nakajima, Takao Maekita
1Carcinogenesis Division, National Cancer Center Research Institute, Chuo-ku, Tokyo, Japan.
Abstract:
Aberrant methylation of CpG islands in promoter regions can permanently inactivate tumor-suppressor genes, as mutations and chromosomal abnormalities do. In gastric cancers, CDKN2A, CDH1, and MLH1 are inactivated more frequently by aberrant methylation than by mutations, and novel tumor-suppressor genes inactivated by promoter methylation are being identified. We recently found that Helicobacter pylori (HP), a potent gastric carcinogen, induces aberrant methylation in gastric mucosae. When a panel of CpG islands was examined, some CpG islands were consistently methylated in gastric mucosae of individuals with HP infection, while others were resistant. The amount of methylated DNA molecules in the gastric mucosae (methylation level) fluctuated while active HP infection was present, but decreased after it was no longer present. Among individuals without active HP infection, methylation levels in the gastric mucosae were higher in individuals with gastric cancers than in those without. DNA methylation is emerging as a promising marker for past exposure to carcinogens and future risk of cancers.
Insights
Helicobacter pylori (HP) infection induces aberrant DNA methylation in the stomach, potentially leading to cancer. DNA methylation levels decrease after HP eradication but remain higher in gastric cancer patients, suggesting it may mark cancer risk.
Area of Science:
- Oncology
- Molecular Biology
- Epigenetics
Background:
- Aberrant DNA methylation of CpG islands in gene promoter regions can inactivate tumor-suppressor genes, similar to mutations.
- In gastric cancers, genes like CDKN2A, CDH1, and MLH1 are frequently inactivated by methylation rather than mutations.
- Novel tumor-suppressor genes inactivated by promoter methylation are continually being identified.
Purpose of the Study:
- To investigate the role of Helicobacter pylori (HP) infection in inducing aberrant DNA methylation in gastric mucosa.
- To examine the dynamics of DNA methylation levels in relation to active HP infection and its eradication.
- To assess the correlation between DNA methylation levels and the presence of gastric cancer.
Main Methods:
- Examined a panel of CpG islands in gastric mucosae from individuals with and without HP infection.
- Quantified DNA methylation levels in gastric mucosae.
- Compared methylation levels between individuals with active HP infection, post-eradication, and those without active infection, including gastric cancer patients.
Main Results:
- HP infection was found to induce aberrant methylation in gastric mucosae.
- Some CpG islands were consistently methylated during HP infection, while others were resistant.
- Methylation levels fluctuated with active HP infection and decreased after eradication.
- Individuals without active HP infection but with gastric cancer had higher methylation levels than those without cancer.
Conclusions:
- Helicobacter pylori infection is a driver of aberrant DNA methylation in the gastric mucosa.
- DNA methylation levels in gastric mucosa are dynamic and influenced by HP infection status.
- Elevated DNA methylation may serve as a biomarker for past carcinogen exposure and future gastric cancer risk.
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