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Related Experiment Videos

ET viewer: an application for predicting and visualizing functional sites in protein structures.

Daniel H Morgan1, David M Kristensen, David Mittelman

  • 1Department of Molecular and Human Genetics, One Baylor Plaza, Houston, TX 77030, USA.

Bioinformatics (Oxford, England)
|July 1, 2006
PubMed
Summary
This summary is machine-generated.

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The Evolutionary Trace Viewer (ETV) simplifies analyzing protein structures by integrating prediction, visualization, and interpretation of functional sites. This Java-based tool enhances understanding of protein evolution and function across platforms.

Area of Science:

  • Structural bioinformatics
  • Computational biology
  • Molecular evolution

Background:

  • Evolutionary Trace (ET) analysis identifies functionally important residues in proteins.
  • Interpreting ET predictions often requires specialized tools and expertise.
  • A unified environment for ET analysis can improve accessibility and efficiency.

Purpose of the Study:

  • To develop a comprehensive software tool for Evolutionary Trace (ET) analysis.
  • To provide a user-friendly platform for visualizing and interpreting ET predictions of functional sites in protein structures.
  • To ensure cross-platform compatibility and ease of use for researchers.

Main Methods:

  • Implementation of the Evolutionary Trace Viewer (ETV) using Java.
  • Integration of ET prediction, visualization, and interpretation functionalities within a single environment.

Related Experiment Videos

  • Utilizing Java Web Start technology for cross-platform accessibility.

    • Main Results:

    • The Evolutionary Trace Viewer (ETV) offers a consolidated environment for ET analysis.
    • ETV enables users to run, visualize, and interpret ET predictions of functional sites.
    • The tool is implemented in Java for broad operating system compatibility.

    Conclusions:

    • The Evolutionary Trace Viewer (ETV) serves as an integrated platform for Evolutionary Trace (ET) analysis.
    • ETV facilitates the interpretation of functional sites in protein structures.
    • The Java-based implementation ensures accessibility across different operating systems.