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Updated: Aug 6, 2026

Expression, Detergent Solubilization, and Purification of a Membrane Transporter, the MexB Multidrug Resistance Protein
Published on: December 3, 2010
Comparison of three structures of the multidrug transporter EmrE
1MRC Laboratory of Molecular Biology, Hills Road, Cambridge CB2 2QH, UK. cgt@mrc-lmb.cam.ac.uk
Abstract:
The small multidrug resistance proteins constitute a family of bacterial antiporters that confer multidrug resistance by H(+)-linked drug efflux across the bacterial cytoplasmic membrane. The structure of EmrE, the family archetype, has been determined by electron crystallography and shows that EmrE in the membrane is an asymmetric homodimer composed of a tightly packed bundle of eight alpha helices, six of which form the substrate-binding site, which has a single molecule of tetraphenylphosphonium at its centre. Two X-ray structures of EmrE have been determined; the first structure was of a non-native conformation of EmrE that formed a crystallographic tetramer, whereas EmrE in the second structure was an asymmetric dimer containing a single molecule of bound tetraphenylphosphonium. This recent EmrE structure bears a superficial resemblance to the electron crystallographic structure and the differences were ascribed to conformational changes. However, the biological relevance of these conformational differences is questionable.
Insights
Small multidrug resistance proteins like EmrE confer bacterial resistance via drug efflux. Structural studies reveal EmrE as an asymmetric homodimer, but the biological relevance of observed conformational differences remains uncertain.
Area of Science:
- Structural biology
- Biochemistry
- Microbiology
Background:
- Small multidrug resistance (SMR) proteins are bacterial antiporters.
- They confer multidrug resistance through proton-linked drug efflux.
- EmrE is the archetype of this protein family.
Purpose of the Study:
- To elucidate the structure of the EmrE protein.
- To understand the mechanism of multidrug resistance conferred by EmrE.
- To compare different structural conformations of EmrE.
Main Methods:
- Electron crystallography was used to determine the structure of EmrE in the membrane.
- X-ray crystallography was employed to obtain two different EmrE structures.
- Structural analysis focused on the substrate-binding site and oligomeric state.
Main Results:
- EmrE forms an asymmetric homodimer in the membrane, with eight alpha helices.
- Six helices create a substrate-binding site containing tetraphenylphosphonium.
- Two X-ray structures revealed a non-native tetramer and an asymmetric dimer with bound substrate.
Conclusions:
- EmrE's structure is an asymmetric homodimer with a defined substrate-binding pocket.
- Observed conformational differences between structures may not be biologically relevant.
- Further investigation is needed to clarify EmrE's functional conformational states.
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