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A Chromatin Immunoprecipitation Assay to Identify Novel NFAT2 Target Genes in Chronic Lymphocytic Leukemia
Published on: December 4, 2018
Identification of nerve growth factor-responsive element of the TCL1 promoter as a novel negative regulatory element
Makoto Hiromura1, Futoshi Suizu, Masumi Narita
1Division of Cancer Biology, Institute for Genetic Medicine, Hokkaido University, Sapporo 060-0815, Japan.
Abstract:
The serine/threonine kinase, Akt (protein kinase B) plays a central role in the regulation of intracellular cell survival. Recently, we demonstrated that the proto-oncogene TCL1, overexpressed in human T-cell prolymphocytic leukemia, is an Akt kinase co-activator. Tightly restricted TCL1 gene expression in early developmental cells suggested that the TCL1 gene is regulated at a transcriptional level. To characterize how TCL1 gene expression is regulated, we cloned the 5'-promoter of the TCL1 gene located at human chromosome 14q32. The 5'-TCL1 promoter region contains a TATA box with cis-regulatory elements for Nur77/NGFI-B (nerve growth factor-responsive element (NBRE), CCAAGGTCA), NFkappaB, and fork head transcription factor. Nur77/NGFI-B, an orphan receptor superfamily transcription factor implicated in T-cell apoptosis, is a substrate for Akt. We hypothesized that TCL1 transactivity is regulated through Akt-induced phosphorylation of Nur77/NGFI-B in vivo. In an electrophoretic mobility shift assay with chromosomal immunoprecipitation assays, wild-type Nur77, but not S350A mutant Nur77, could specifically bind to TCL1-NBRE. A luciferase assay demonstrated that TCL1-NBRE is required for inhibition of TCL1 transactivity upon nerve growth factor/platelet-derived growth factor stimulation, which activates Akt and phosphorylates Nur77. Using a chromosomal immunoprecipitation assay with reverse transcription-PCR, nerve growth factor stimulation inhibited binding of endogenous Nur77 to TCL1-NBRE, in turn, suppressing TCL1 gene expression. The results together establish that TCL1-NBRE is a novel negative regulatory element of Nur77 (NGFI-B). To the best of our knowledge, TCL1-NBRE is the first direct target of Nur77 involving the regulation of intracellular cell death survival. This Akt-induced inhibitory mechanism of TCL1 should play an important role in immunological and/or neuronal development in vivo.
Insights
The proto-oncogene TCL1, an Akt co-activator, is regulated by Nur77/NGFI-B. Akt-induced Nur77 phosphorylation inhibits TCL1 gene expression via the TCL1-NBRE, impacting cell survival and development.
Area of Science:
- Molecular Biology
- Cellular Signaling
- Gene Regulation
Background:
- The serine/threonine kinase Akt (protein kinase B) is crucial for cell survival.
- The proto-oncogene TCL1 acts as an Akt co-activator and is overexpressed in T-cell prolymphocytic leukemia.
- TCL1 gene expression is tightly regulated, suggesting transcriptional control mechanisms.
Purpose of the Study:
- To characterize the transcriptional regulation of the TCL1 gene.
- To investigate the role of Nur77/NGFI-B in TCL1 gene expression.
- To elucidate the mechanism of Akt-induced regulation of TCL1.
Main Methods:
- Cloning and analysis of the 5'-TCL1 promoter region.
- Electrophoretic mobility shift assays (EMSA) and chromatin immunoprecipitation (ChIP) assays.
- Luciferase reporter assays to assess promoter activity.
- Reverse transcription-PCR (RT-PCR) to quantify gene expression.
Main Results:
- The TCL1 promoter contains cis-regulatory elements, including a Nur77/NGFI-B binding site (TCL1-NBRE).
- Akt-induced phosphorylation of Nur77/NGFI-B at S350 is required for its interaction with TCL1-NBRE.
- Nerve growth factor/platelet-derived growth factor stimulation leads to Akt activation, Nur77 phosphorylation, and subsequent inhibition of TCL1 transactivity and gene expression.
Conclusions:
- TCL1-NBRE is identified as a novel negative regulatory element controlled by Nur77/NGFI-B.
- Akt-induced phosphorylation of Nur77/NGFI-B suppresses TCL1 gene expression.
- This regulatory mechanism involving TCL1 and Nur77/NGFI-B is significant for cell survival and may play a role in immunological and neuronal development.
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