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Updated: Aug 7, 2026

A Protocol for Computer-Based Protein Structure and Function Prediction
Published on: November 3, 2011
The prediction of hydrophobicity gradients within membrane interactive protein alpha-helices using a novel graphical
Frederick Harris1, Sarah Dennison, David A Phoenix
1Department of Forensic and Investigative Sciences, University of Central Lancashire, Preston, PR1 2HE, UK.
Abstract:
Here, it is shown that amphiphilicity profiling based on the mean hydrophobic moment provides a simple visual guide for the identification of oblique orientated alpha-helices. The methodology has an efficiency of circa 70% and predicts that approximately 40% of transmembrane alpha-helices may possess these structures.
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