Related Experiment Video
Updated: Feb 6, 2026

Using Phylogenetic Analysis to Investigate Eukaryotic Gene Origin
Published on: August 14, 2018
MicroFootPrinter: a tool for phylogenetic footprinting in prokaryotic genomes
1Department of Computer Science and Engineering, University of Washington, Box 352350, Seattle, WA 98195-2350, USA.
Abstract:
Phylogenetic footprinting is a method for the discovery of regulatory elements in a set of homologous regulatory regions, usually collected from multiple species. It does so by identifying the most conserved motifs in those homologous regions. This note describes web software that has been designed specifically for this purpose in prokaryotic genomes, making use of the phylogenetic relationships among the homologous sequences in order to make more accurate predictions. The software is called MicroFootPrinter and is available at http://bio.cs.washington.edu/software.html.
Related Concept Videos
Genomic DNA in Prokaryotes
Genomic Diversity in Bacteria
Although bacterial genomes are much...
Comparing Mitochondrial, Chloroplast, and Prokaryotic Genomes
Prokaryotic Transcriptional Activators and Repressors
Transcription of prokaryotic...
Replication in Prokaryotes
Replication in Prokaryotes
Many Proteins Work Together to Replicate the Chromosome
Replication is coordinated and carried out by a host of specialized...
Genome Size and the Evolution of New Genes

