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Identification of Rare Bacterial Pathogens by 16S rRNA Gene Sequencing and MALDI-TOF MS
Published on: July 11, 2016
Application of molecular techniques to the study of hospital infection
Aparajita Singh1, Richard V Goering, Shabbir Simjee
1Department of Medicine, Section of Infectious Diseases, Henry Ford Hospital, Wayne State University School of Medicine, Detroit, MI 48202, USA.
Abstract:
Nosocomial infections are an important source of morbidity and mortality in hospital settings, afflicting an estimated 2 million patients in United States each year. This number represents up to 5% of hospitalized patients and results in an estimated 88,000 deaths and 4.5 billion dollars in excess health care costs. Increasingly, hospital-acquired infections with multidrug-resistant pathogens represent a major problem in patients. Understanding pathogen relatedness is essential for determining the epidemiology of nosocomial infections and aiding in the design of rational pathogen control methods. The role of pathogen typing is to determine whether epidemiologically related isolates are also genetically related. To determine molecular relatedness of isolates for epidemiologic investigation, new technologies based on DNA, or molecular analysis, are methods of choice. These DNA-based molecular methodologies include pulsed-field gel electrophoresis (PFGE), PCR-based typing methods, and multilocus sequence analysis. Establishing clonality of pathogens can aid in the identification of the source (environmental or personnel) of organisms, distinguish infectious from noninfectious strains, and distinguish relapse from reinfection. The integration of molecular typing with conventional hospital epidemiologic surveillance has been proven to be cost-effective due to the associated reduction in the number of nosocomial infections. Cost-effectiveness is maximized through the collaboration of the laboratory, through epidemiologic typing, and the infection control department during epidemiologic investigations.
Insights
Molecular typing of pathogens is crucial for understanding hospital-acquired infections (nosocomial infections) and controlling their spread. DNA-based methods help identify infection sources and prevent further cases, improving patient outcomes.
Area of Science:
- Medical Microbiology
- Infectious Diseases
- Hospital Epidemiology
Background:
- Nosocomial infections affect 2 million US patients annually, causing significant morbidity, mortality, and excess healthcare costs.
- Multidrug-resistant pathogens are an increasing concern in hospital-acquired infections.
- Understanding pathogen relatedness is vital for effective epidemiology and control strategies.
Purpose of the Study:
- To highlight the importance of molecular typing in determining pathogen relatedness for epidemiologic investigations.
- To emphasize the role of DNA-based methods in identifying the source and spread of nosocomial infections.
- To demonstrate the cost-effectiveness of integrating molecular typing with surveillance for infection control.
Main Methods:
- Utilizing DNA-based molecular methodologies for pathogen typing.
- Employing techniques such as pulsed-field gel electrophoresis (PFGE), PCR-based typing, and multilocus sequence analysis.
- Integrating molecular typing data with conventional hospital epidemiologic surveillance.
Main Results:
- Molecular typing establishes genetic relatedness between epidemiologically linked isolates.
- Pathogen clonality identification aids in pinpointing infection sources (environmental/personnel) and differentiating strains.
- Integration of molecular typing with surveillance reduces nosocomial infections, proving cost-effective.
Conclusions:
- DNA-based molecular typing is essential for accurate epidemiologic investigation of nosocomial infections.
- Establishing pathogen clonality supports targeted infection control interventions.
- Collaborative efforts between laboratories and infection control departments enhance cost-effectiveness and reduce infection rates.
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