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Updated: Aug 7, 2026

Purification of Ubiquitinated p53 Proteins from Mammalian Cells
Published on: March 21, 2022
L2DTL/CDT2 and PCNA interact with p53 and regulate p53 polyubiquitination and protein stability through MDM2 and
Damon Banks1, Min Wu, Leigh Ann Higa
1Department of Genetics, Yale University School of Medicine, New Haven, Connecticut 06520, USA.
Abstract:
The CUL4-ROC1 E3 ligase complex regulates genome stability, replication and cell cycle progression. A novel WD40 domain-containing protein, L2DTL/CDT2 and PCNA were identified as proteins associated with CUL4/DDB1 complexes. Inactivation of CUL4A, L2DTL, PCNA, DDB1 or ROC1 induced p53 stabilization and growth arrest. L2DTL, PCNA and DDB1/CUL4A complexes were found to physically interact with p53 tumor suppressor and its regulator MDM2/HDM2. The isolated CUL4A complexes display potent and robust polyubiquitination activity towards p53 and this activity is dependent on L2DTL, PCNA, DDB1, ROC1 and MDM2/HDM2. We also found that the interaction between p53 and CUL4 complex is regulated by DNA damage. Our data further showed that MDM2/HDM2 is rapidly proteolyzed in response to UV irradiation and this process is regulated by CUL4/DDB1 and PCNA. Our studies demonstrate that PCNA, L2DTL and the DDB1-CUL4A complex play critical and differential roles in regulating the protein stability of p53 and MDM2/HDM2 in unstressed and stressed cells.
Insights
The CUL4-ROC1 E3 ligase complex, with L2DTL and PCNA, controls p53 and MDM2/HDM2 stability. DNA damage regulates these interactions, impacting cell cycle progression and genome stability.
Area of Science:
- Cellular Biology
- Molecular Biology
- Biochemistry
Background:
- The CUL4-ROC1 E3 ligase complex is crucial for regulating genome stability, DNA replication, and cell cycle progression.
- Understanding the regulatory mechanisms of key proteins like p53 and MDM2/HDM2 is vital for comprehending cellular responses to stress and maintaining genomic integrity.
Purpose of the Study:
- To investigate the role of novel WD40 domain-containing protein L2DTL/CDT2 and PCNA in association with CUL4/DDB1 complexes.
- To elucidate the function of the DDB1-CUL4A complex in regulating the stability of p53 and its inhibitor MDM2/HDM2.
- To determine how DNA damage influences the interaction between p53 and the CUL4 complex.
Main Methods:
- Protein complex isolation and identification.
- Co-immunoprecipitation assays to study protein interactions.
- Ubiquitination assays to assess protein degradation.
- Western blotting to detect protein stabilization and degradation.
Main Results:
- L2DTL/CDT2 and PCNA associate with CUL4/DDB1 complexes, forming functional units that regulate p53 and MDM2/HDM2 stability.
- Inactivation of components like CUL4A, L2DTL, PCNA, DDB1, or ROC1 leads to p53 stabilization and cell growth arrest.
- The DDB1-CUL4A complex exhibits robust polyubiquitination activity towards p53, dependent on L2DTL, PCNA, and MDM2/HDM2.
- MDM2/HDM2 undergoes rapid proteolysis upon UV irradiation, a process mediated by the CUL4/DDB1 and PCNA complex.
- The interaction between p53 and the CUL4 complex is modulated by DNA damage.
Conclusions:
- PCNA, L2DTL, and the DDB1-CUL4A complex play critical, distinct roles in controlling p53 and MDM2/HDM2 protein stability under both normal and stressed conditions.
- These findings highlight a novel regulatory pathway involving the CUL4-ROC1 E3 ligase complex in maintaining genome stability and cell cycle control.
- The study provides insights into the dynamic regulation of tumor suppressor p53 and its regulator MDM2/HDM2 in response to cellular stress.
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