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NUMB is a break of WNT-Notch signaling cycle
1M&M Medical BioInformatics, Hongo 113-0033, Japan. mkatoh@ncc.go.jp
Abstract:
Notch, FGF and WNT signaling pathways cross-talk during embryogenesis, tissue regeneration and carcinogenesis. Notch-ligand binding to Notch receptors leads to the cleavage of Notch receptors and the following nuclear translocation of Notch intracellular domain (NICD) to induce transcriptional activation of Notch target genes. Notch signaling inhibitors, NUMB and NUMB-like (NUMBL), are docking proteins with PTB domain. We searched for the TCF/LEF-binding site within the promoter region of NUMB and NUMBL genes. Because two TCF/LEF-binding sites were identified within human NUMB promoter based on bioinformatics and human intelligence (Humint), comparative integromics analyses on NUMB orthologs were further performed. Chimpanzee NUBM gene, consisting of 13 exons, was identified within NW_115880.1 genome sequence. XM_510045.1 was not the correct coding sequence for chimpanzee NUMB. Chimpanzee NUMB gene was found to encode a 651-amino-acid protein showing 99.5, 93.9 and 82.6% total-amino-acid identity with human NUMB, mouse Numb and chicken numb, respectively. Human NUMB mRNA was expressed in placenta, ES cells, neural tissues, trachea, testis, uterus, thymus, coronary artery as well as in a variety of tumors, such as cervical cancer, tong tumor, brain tumor, colorectal and breast cancer. Although distal TCF/LEF-binding site within human NUMB promoter was conserved only among primate NUMB orthologs, proximal TCF/LEF-binding site was conserved among primate and rodent NUMB orthologs. NUMB, JAG1, FGF18, FGF20 and SPRY4 are potent targets of the canonical WNT signaling pathway in progenitor cells. NUMB inhibits Notch signaling in progenitor cells to induce differentiation, while JAG1 activates Notch signaling in stem cells to maintain self-renewal potential. Because Notch signaling inhibitor NUMB was identified as the safe apparatus for the WNT - Notch signaling cycle, epigenetic silencing, deletion and loss-of-function mutation of NUMB gene could lead to carcinogenesis through the dysregulation of the WNT - Notch signaling cycle.
Insights
NUMB acts as a crucial inhibitor in the WNT-Notch signaling pathway, preventing carcinogenesis. Its dysregulation through epigenetic silencing or mutation can disrupt this balance, leading to cancer development.
Area of Science:
- Developmental Biology
- Molecular Biology
- Cancer Biology
Background:
- Notch, FGF, and WNT signaling pathways are critical regulators of embryogenesis, tissue regeneration, and carcinogenesis.
- Notch signaling involves receptor cleavage and nuclear translocation of the Notch intracellular domain (NICD) to activate target genes.
- NUMB and NUMBL are PTB domain-containing proteins that inhibit Notch signaling.
Purpose of the Study:
- To investigate the regulatory elements within the promoter regions of NUMB and NUMBL genes.
- To identify conserved TCF/LEF-binding sites in NUMB orthologs across species.
- To explore the role of NUMB in the WNT-Notch signaling pathway and its implications in carcinogenesis.
Main Methods:
- Bioinformatic analysis and comparative integromics were used to identify TCF/LEF-binding sites in NUMB and NUMBL promoters.
- Ortholog analysis of the chimpanzee NUMB gene was performed.
- Expression analysis of human NUMB mRNA in various tissues and tumors was conducted.
Main Results:
- Two TCF/LEF-binding sites were identified in the human NUMB promoter.
- The chimpanzee NUMB gene was identified, encoding a protein highly homologous to human NUMB.
- Human NUMB mRNA expression was detected in diverse tissues and tumors, including cervical, brain, colorectal, and breast cancers.
- Differential conservation of TCF/LEF-binding sites was observed between primate and rodent NUMB orthologs.
- NUMB was confirmed as a target of the WNT signaling pathway and acts as a Notch inhibitor, promoting progenitor cell differentiation.
Conclusions:
- The proximal TCF/LEF-binding site in the NUMB promoter is conserved across primates and rodents, suggesting a fundamental regulatory role.
- NUMB plays a critical role in maintaining the WNT-Notch signaling balance, inhibiting Notch signaling to promote differentiation.
- Epigenetic silencing, deletion, or loss-of-function mutations in NUMB can lead to carcinogenesis due to dysregulation of the WNT-Notch signaling cycle.
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