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Published on: March 26, 2012
Editing of the Sendai virus P/C mRNA by G insertion occurs during mRNA synthesis via a virus-encoded activity
S Vidal1, J Curran, D Kolakofsky
1Department of Microbiology, University of Geneva Medical School, Switzerland.
Abstract:
Two forms of the Sendai virus P/C mRNA have been predicted: one an exact copy of the viral genome, and the other with a single G insertion within a run of three G's. We directly cloned the mRNA or portions of it containing the insertion site and screened the resulting colonies with oligonucleotides that could distinguish the presence of three or four G's at this position. We found that 31% of the mRNAs did in fact contain the predicted insertion, whereas the viral genomes contained no heterogeneity at this position. A smaller fraction (7%) of the mRNA contained two to eight G's inserted at this position. The insertions also took place during RNA synthesis in vitro with purified virions but were not detected when the mRNA was expressed in vivo via a vaccinia virus recombinant. When the Sendai virus- and vaccinia virus-derived P/C mRNAs were coexpressed in the same cells under conditions in which each could be distinguished, those from the Sendai genome were altered as before, but those from the vaccinia virus genome remained unaltered. The activity that alters the mRNA is therefore likely to be coded for by the virus and cannot function in trans.
Insights
Sendai virus P/C mRNA exhibits genetic variation, with 31% containing a G insertion not found in the viral genome. This RNA editing occurs during viral replication but not when expressed via vaccinia virus.
Area of Science:
- Virology
- Molecular Biology
- Genetics
Background:
- Sendai virus P/C mRNA exists in predicted forms: a genomic copy and one with a G insertion.
- Previous studies hypothesized the existence of these mRNA variants.
Purpose of the Study:
- To investigate the heterogeneity of Sendai virus P/C mRNA.
- To determine the mechanism and origin of the G insertion in P/C mRNA.
Main Methods:
- Direct cloning of Sendai virus P/C mRNA and screening using specific oligonucleotides.
- In vitro RNA synthesis using purified Sendai virions.
- In vivo expression of viral mRNA using vaccinia virus recombinants.
- Coexpression of Sendai virus- and vaccinia virus-derived mRNAs in cells.
Main Results:
- 31% of cloned Sendai virus P/C mRNAs contained a single G insertion, while viral genomes were homogeneous.
- A smaller fraction (7%) showed insertions of two to eight Gs.
- G insertions occurred during in vitro RNA synthesis but not in vivo via vaccinia virus.
- Sendai virus-derived mRNAs were altered in coexpression studies, while vaccinia virus-derived mRNAs remained unchanged.
Conclusions:
- Sendai virus P/C mRNA undergoes a specific G insertion, leading to genetic heterogeneity.
- The RNA-modifying activity is likely virus-coded and specific to Sendai virus.
- This modification does not occur when P/C mRNA is expressed from a heterologous (vaccinia) viral system.
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